Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1032 138 2e-27 >seq1032 Length=45607 Score = 138 bits (152), Expect = 2e-27 Identities = 348/519 (67%), Gaps = 14/519 (3%) Strand=Plus/Plus Query 39659 TCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA 39718 ||||| || || ||||| |||||||| ||||||||||| || ||||| || |||| ||| Sbjct 28839 TCGTTGGAGAACGTGAGACCAGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGATGCA 28898 Query 39719 AAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA 39778 || ||||| || |||||||| ||||| ||||| || || |||| |||| | || || Sbjct 28899 AAGGATCCGGAGAAGAAGATACCTTCAACTGCAGCGAAGGCAATCAGTCGCATGGCG-AA 28957 Query 39779 CTTGTATCATTATGT-----ATCCACTTCTGTGCCCAATCAG-CTTTCTTCTTTACACAA 39832 | | | | ||| ||||| ||||||| || | |||||| | | ||| Sbjct 28958 GGTCGAGC-TCTTGTCGCTGATCCATCGGAGTGCCCAGTCCGCCTTTCTGC-GGATGCAA 29015 Query 39833 GGCATTGTTTCTATAGCATTAAAGAGATAATGTT-TTTCATCACTATCTTTAACATATGT 39891 || || | || || || || || || | ||||| || | || ||| ||||| Sbjct 29016 GGGATATTGTCGATGGCGTTGAACAGGT-ATGTTCGTTGTTTGGGCTCGCTAATGTATGT 29074 Query 39892 ATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTA 39951 || || | || || | || || |||||||| || ||| ||||| ||||| || Sbjct 29075 GTCGATGAGGAGGGAGTATGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAATCCATA 29134 Query 39952 AAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATT 40011 || |||| |||||| | | | || || | | || | |||| ||| || || || Sbjct 29135 GAAGCATCGTGCTTCGGGTACTGTCACTTCGGCGCTGAAGCGTTCCACCAGGTTCTCGTT 29194 Query 40012 CACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATC 40071 || || ||||| ||||| || ||||| | |||||| || || | || || Sbjct 29195 GACGATGCCATCTGATGCGGCGAAGAATGCAAGAACATGTGAGATGAAGAAACGCTCGTC 29254 Query 40072 G--GGTG-TCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGT 40128 | |||| || |||||||||| | ||| ||||||| ||| | || || || || Sbjct 29255 GTCGGTGAGGCGCTTGTTCCAGTCATGCAGATCCTTTGATAGATCAATCTCCTCGGCAGT 29314 Query 40129 CCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATAT 40167 ||| || || || || ||||| ||||||||||||||||| Sbjct 29315 CCAGAATGATGCTTCGGCCTTCTTGTACATGTTCCATAT 29353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686891395448280