Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq721 221 2e-52 >seq721 Length=104476 Score = 221 bits (244), Expect = 2e-52 Identities = 622/943 (66%), Gaps = 23/943 (2%) Strand=Plus/Minus Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279 |||||| |||| || || | ||||| | |||||| || || ||||| | || Sbjct 60633 GACATAGGTTGGCAGAGCAAGAGATGCAAGATTGCATACGGCGACTTCATCAGGTGCAGT 60574 Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 |||||| | || ||||| || |||||||| ||||| ||||| || | |||||| ||||| Sbjct 60573 GTACTCGATGATCTCTGTGCACAAGTTGGAGCTCTTGATCGTTCCGAGATTCTTCTGGTT 60514 Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399 ||||| |||| |||||||||||||| ||| | || || ||||||||||| | Sbjct 60513 GCTCTTGCGGTTGGCAGCATCCTTGTAGAGGATGAAAGGTCCGCCAGTCTCCGTCTGGGC 60454 Query 111400 TTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCG 111458 || ||||| || | ||| | | || | || | ||| | || |||| || || Sbjct 60453 TTCCAGAATGGCATACCAGATCTTCTG-AGCACGCACAGTCTCGCGTCCCCGACCTTCTT 60395 Query 111459 CCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTG 111518 |||||| ||||| || | || || || ||||| | | || | ||||| || Sbjct 60394 TCTCGTAGCGAGTGTAAAGCTCCTCGAATTCGTCACCGTACACATCAGCAAGACCGGGAC 60335 Query 111519 CCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAG 111576 || || || || | || | ||||| | | ||| || || ||||||||||| || Sbjct 60334 ACTCGTTGGGGCACATCAGGGTCCATT--CGGCGTTCTGTTCCACACGCTTCATGAACAG 60277 Query 111577 GTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTT 111636 || || |||||||||| | || || || | | ||| | ||||| | || ||||| Sbjct 60276 ATCGGGGATCCACAGGGCGAAGAACAGGTCGCGAGCGCGAACTTCTTCCTTTCCGTGGTT 60217 Query 111637 GAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGAT 111696 |||| || | ||| |||| ||| |||||||||||||| ||||| | || | Sbjct 60216 CTTGCGTAGATCCATGAAAGAAATGACATCGGCGTGCCATGGCTCGAGATAAATGGCAAA 60157 Query 111697 AGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATAC 111750 || || ||||| ||| |||||| ||||| || |||||| ||| | || Sbjct 60156 AGCGCC---AGGACGCTTGTTGCCACCTTGATCGACATAACGAGCTGTGTTGTTGTAGAC 60100 Query 111751 GCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATT 111810 |||||||| ||||| | || | ||| || || || || ||| ||| | Sbjct 60099 ACGAAGCATGGGAATCAGGCCGTTGGATGTGCCGTTCGTGCCAGCAATGTAGGATCCGGT 60040 Query 111811 GGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCA 111868 ||| | | | || || | || ||||| ||||| ||||||||| | ||||| Sbjct 60039 GGCACGAATTTTGTGACAGTTGAGACCGATACCACCAGCATTCTTTGAGATCATAGCGCA 59980 Query 111869 CACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAG 111928 | | | || || | || || || | || ||| || || || |||| |||||| Sbjct 59979 AATT--TTCAGTGTATCGTAAATTCCCTCAATGCTGTCGTCTTTCATGTCGATGAGGAAG 59922 Query 111929 CAACTGGACATCT-GCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 111987 ||| | || || || || | || |||||||| |||| || ||||||| |||||| | Sbjct 59921 CAAGAAGCCAACTGGCCGT-TCGGCGTACCAGCGCTGAACAGTGTTGGTGATGCGTGTGT 59863 Query 111988 GAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGT 112046 ||| ||| | | ||||| | || ||||||||| | | | | || || || || |||| Sbjct 59862 GAA-GTACTTATTCGACATGTAGTTGTATGTCTCGATGGCGGCCTCGATATCGTCTCCGT 59804 Query 112047 GGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGA 112106 | || |||| ||| || ||||||| ||||| ||| || | || || ||||||||| Sbjct 59803 GAATTCCGACTGCTACACGCATGATCATGTGCTGCGGTCTCTCGGCGACCTTGCCATCGA 59744 Query 112107 GCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 ||| | || || ||| || ||||||| |||||||| Sbjct 59743 TCCGGAGCAGGTATGAGCGCTCTAGCGTTTTGAAGCCAAAGTA 59701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628016087239200