Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq721 159 4e-34 seq1032 95.1 1e-14 >seq721 Length=104476 Score = 159 bits (176), Expect = 4e-34 Identities = 617/959 (64%), Gaps = 19/959 (2%) Strand=Plus/Minus Query 118611 TCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAA 118670 ||||| | | | || ||||| |||||||| |||| | ||||| ||||| | | | Sbjct 60716 TCGATGATCTTGTTCAGATTCTTGGTGACCACCTGAACAACCTCATGCAGCTTCTGGAAG 60657 Query 118671 TCAAAACTGCGAGT-CTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACA 118729 ||||| || | || ||| | |||||| | || || || | || || ||||| || Sbjct 60656 TCAAA-CTTCTCGTTCTCGAGGTCGACATAGGTTGGCAGAGCAAGAGATGCAAGATTGCA 60598 Query 118730 CACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTT 118789 || | | ||||| |||||||||| || || || ||||||||||| || ||||| Sbjct 60597 TACGGCGACTTCATCAGGTGCAGTGTACTCGATGATCTCTGTGCACAAGTTGGAGCTCTT 60538 Query 118790 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTA 118849 || || || | ||||| || || ||| ||| ||||||||||| || ||| | Sbjct 60537 GATCGTTCCGAGATTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGGATGAA 60478 Query 118850 TGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCA 118908 || || |||||||| |||| | ||||| || | ||||| | || | ||| ||| Sbjct 60477 AGGTCCGCCAGTCTCCGTCTGGGCTTCCAGAATGGCATACCAGATCTTCTG-AGCACGCA 60419 Query 118909 CAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCAC 118968 |||| || | || || |||| |||||| ||||| || | || || || |||| Sbjct 60418 CAGTCTCGCGTCCCCGACCTTCTTTCTCGTAGCGAGTGTAAAGCTCCTCGAATTCGTCAC 60359 Query 118969 CCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCT 119028 | | || | || || || || | ||||| | || | ||||| | || Sbjct 60358 CGTACACATCAGCAAGACCGGGACACTCGTTGGGGCACATCAGGGTCCATTCGGCGTTCT 60299 Query 119029 CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGC 119088 || || ||||||||||| || || |||||||| || || |||| || || ||| || Sbjct 60298 GTTCCACACGCTTCATGAACAGATCGGGGATCCACAGGGCGAAGAACAGGTCGCGAGCGC 60239 Query 119089 GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCC 119148 || ||||||| | || || || || | |||| || |||| ||| ||||||| Sbjct 60238 GAACTTCTTCCTTTCCGTGGTTCTTGCGTAGATCCATGAAAGAAATGACATCGGCGTGCC 60179 Query 119149 ACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACAT 119202 | || || || || | || | | || | |||| ||| | || | |||| Sbjct 60178 ATGGCTCGAGATAAATGGCAAAAGCGCC---AGGACGCTTGTTGCCACCTTGATCGACAT 60122 Query 119203 ACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTG 119262 | | || ||| ||| | ||||||||||| ||||| | || | |||| ||| || | Sbjct 60121 AACGAGCTGTGTTGTTGTAGACACGAAGCATGGGAATCAGGCCGTTGGATGTGCCGTTCG 60062 Query 119263 TCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTG 119322 | || ||| || |||| | | | ||| || | ||| ||||| || | Sbjct 60061 TGCCAGCAATGTAGGATCCGGTGGCACGAATTTTGTGACAGTTGAGACCGATACCACCAG 60002 Query 119323 CCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCAC 119382 | ||||||||| ||||| | || | |||| || || || || ||| Sbjct 60001 CATTCTTTGAGATCATAGCGCAAATTTTCAGTGTATCGTAAATTCCCTCAATGCTGTCGT 59942 Query 119383 CCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCC--TGGGTGTACCAGCGTTGAA 119440 | || | ||||||||||||| | || | |||| | || ||||||||| |||| Sbjct 59941 CTTTCATGTCGATGAGGAAGCAAGAAGCCAACT--GGCCGTTCGGCGTACCAGCGCTGAA 59884 Query 119441 GAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGTAGGTCTCCAAGA 119499 || ||||||| ||||| |||| ||| | | ||||| | || ||| ||||| | | Sbjct 59883 CAGTGTTGGTGATGCGTGTGTGAA-GTACTTATTCGACATGTAGTTGTATGTCTCGATGG 59825 Query 119500 CGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGT 119558 |||| || || || |||||||| |||| | || ||||| | ||||| || ||| Sbjct 59824 CGGCCTCGATATCGTCTCCGTGAATTCCGACTGCTACACGCATGATCATGTGCTGCGGT 59766 >seq1032 Length=45607 Score = 95.1 bits (104), Expect = 1e-14 Identities = 295/451 (65%), Gaps = 23/451 (5%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAG---TTTGTCTTCCCGTCCAAGCTGATATTCTCC 129784 ||||| ||||| ||||||||||||||| || ||||| || ||| |||||||||| Sbjct 28509 TAGTCTCCAACGCGCTTCTCGAAGAAGAAGTTGGTCTTGCCACCCAGCGAGATATTCTCC 28568 Query 129785 ATAAAATCAAATGGGTTCTTTGAGTTCCA-AATTGCTGGCACTCCAATCTGTTTGAGGAG 129843 || || || || ||||| | | ||| | || | |||| || | | ||| || Sbjct 28569 ATGAAGTCGAACGGGTTGGTGGCGTTGTAGAACTTCTGGTTG-CCGAGCGCCAGGAGCAG 28627 Query 129844 ACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT 129903 ||| || | || | |||||||||| |||| || | |||||| |||| ||| Sbjct 28628 ACGGTCGGCCACAAATTCAATGTACTGGCACATGAGCTTAGCGTTCATGCCGAGGAGTGC 28687 Query 129904 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGC 129963 || ||||| ||||| | |||| ||| ||| || | || || || |||||| Sbjct 28688 GCAGGGGAGGGCGTCTGTCAGGAACTCCTGCTCGATCGCAACGGCCTCG---ACGATG-- 28742 Query 129964 GTGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGA----AGAGTTCCAC-GGCA 130018 ||| ||| | ||| | | || |||| | |||| | | |||| Sbjct 28743 ----ATGCTCTGTACGACAGCCTTTGAGGGCTTGTTCTTCAGGTGAGAGAACAGCAGGCA 28798 Query 130019 ----AACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 || || ||| | || ||||| || |||||||| || || ||||| ||||| Sbjct 28799 CGCGAAGTCGGTGTGCATGCCTTCGTCGCGCGAGATGAGCTCGTTGGAGAACGTGAGACC 28858 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||||||||| |||||||||| |||||| || | ||| || || ||||||||||| Sbjct 28859 AGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGATGCAAAGGATCCGGAGAAGAAGAT 28918 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGC 130165 || || || ||||| |||| || ||| Sbjct 28919 ACCTTCAACTGCAGCGAAGGCAATCAGTCGC 28949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618419530398120