Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq721 223 4e-53 seq537 109 6e-19 seq1032 104 3e-17 >seq721 Length=104476 Score = 223 bits (246), Expect = 4e-53 Identities = 903/1401 (64%), Gaps = 45/1401 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || || |||| ||||| || || || || || | | | Sbjct 59767 CCGCAGCACATGATCATGCGTGTAGCAGTCGGAATTCACGGAGACGATATCGAGGCCGCC 59826 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||||||| || | ||||| | | ||| |||| |||||| ||||||| || || Sbjct 59827 ATCGAGACATACAACTACATGTCGAATAAGTAC-TTCACACACGCATCACCAACACTGTT 59885 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 || |||||||| || | ||| || | ||||||||| |||| || || || || Sbjct 59886 CAGCGCTGGTACGCCGAACGGCCAGTTGGCTTCTTGCTTCCTCATCGACATGAAAGACGA 59945 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGCT 104458 | || | || || || | || || | | | ||||| | ||||||||| ||| Sbjct 59946 CAGCATTGAGGGAATTTACGATACACTGAA--AATTTGCGCTATGATCTCAAAGAATGCT 60003 Query 104459 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 104518 || ||||| || | || || | | | |||| ||| ||| || || Sbjct 60004 GGTGGTATCGGTCTCAACTGTCACAAAATTCGTGCCACCGGATCCTACATTGCTGGCACG 60063 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || || ||| | || | ||||| |||||||| || | ||| |||||| || ||| Sbjct 60064 AACGGCACATCCAACGGCCTGATTCCCATGCTTCGTGTCTACAACAACACAGCTCGTTAT 60123 Query 104579 GTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632 || |||||| ||| ||||| || || | || | ||||| ||||||||| Sbjct 60124 GTCGATCAAGGTGGCAACAAGCGTCCT---GGCGCTTTTGCCATTTATCTCGAGCCATGG 60180 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGC 104690 ||||| ||| |||| ||| | || | || ||||| || | || || | ||| Sbjct 60181 CACGCCGATGTCATTTCTTTCATGGATCTACGCAAGAACCACGGAAAGGAAGAAGTTCGC 60240 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 | | ||||| || |||| ||| || ||||| || ||||| ||||||||| | || || Sbjct 60241 GCT--CGCGACCTGTTCTTCGCCCTGTGGATCCCCGATCTGTTCATGAAGCGTGTGGAAC 60298 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGG 104810 ||| | | | ||| | || | || || || || || ||||| | |||| | Sbjct 60299 AGAACGCCGAATGGACCCTGATGTGCCCCAACGAGTGTCCCGGTCTTGCTGATGTGTACG 60358 Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGAC-TGCGACG 104869 |||| || || || | |||||||| |||||| |||||||||||| ||| | ||| Sbjct 60359 GTGACGAATTCGAGGAGCTTTACACTCGCTACGAGAAAGAAGGTCGGG-GACGCGAGACT 60417 Query 104870 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 |||| ||| | || | | ||| | || ||||| | | || || |||||||| ||| Sbjct 60418 GTGCGTGCT-CAGAAGATCTGGTATGCCATTCTGGAAGCCCAGACGGAGACTGGCGGACC 60476 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 | ||| || ||||| || || |||| ||||| || || |||||| | || ||| Sbjct 60477 TTTCATCCTCTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAATCTCGGAACGAT 60536 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 |||||| ||||| | || ||||| ||| | || | || | ||||| || || Sbjct 60537 CAAGAGCTCCAACTTGTGCACAGAGATCATCGAGTACACTGCACCTGATGAAGTCGCCGT 60596 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGA 105108 || || || ||||| | ||||| || | ||||| || | |||| ||| ||||| Sbjct 60597 ATGCAATCTTGCATCTCTTGCTCTGCCAACCTATGTCGACCTCGAGAACGAGAAGTTTGA 60656 Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 | | || || || || ||| | |||||||| || || |||| | || || Sbjct 60657 CTTCCAGAAGCTGCATGAGGTTGTTCAGGTGGTCACCAAGAATCTGAACAAGATCATCGA 60716 Query 105169 TAGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227 || || || || ||| | | | | | || ||| | ||| | || || | Sbjct 60717 GGTCAACCACTATCCAGTGCCAGAGGCCAAGAAGAGC-AACATGCGCCACAGGCCCATCG 60775 Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCG 105287 |||| |||||| ||||| || |||| ||| || | ||| |||| || || Sbjct 60776 GTCTTGGTGTTAGCGGTCTTGCTGATGCCTTCCTTGCTCTTCGTATGCCATTCGAGTCGC 60835 Query 105288 ACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGG 105347 ||| || || | || | || || |||||||| || || || |||||| | Sbjct 60836 CCGAGGCTCGTGAGCTGAACATCCAGATCTTCGAGACCATCTACCATGCTGCTCTTACCG 60895 Query 105348 CGAGTTCAGAGTTGGC--AGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGC 105405 | || || |||| ||| | | |||||| || || |||| ||| |||||||||| Sbjct 60896 CCTCTTGTGATCTGGCCAAGAAGCT--TGGTCCTTACGAGACCTATGAAGGTTCTCCAGT 60953 Query 105406 TTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC--AAGCTTCACTACGAC 105463 ||| | || | |||||| | |||||||||| || | || || || | || Sbjct 60954 CTCAAAGGGCGAGCTTCAGTACGATATGTGGG-GCGTTACCCCGTCAG-ATCTTTGGGAT 61011 Query 105464 TGGGAAGCTCTCAAGGAACGCATCAAG------GAGAAGGGTCTTCGTAACAGTCTCCTC 105517 ||||| |||| ||| || |||| ||| | ||| | || ||| | | ||| Sbjct 61012 TGGGA----CTCATTGAAGGC--CAAGATTGCTGAGCATGGTGTGCGAAACTCTTTGCTC 61065 Query 105518 ATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 105577 | ||||| ||||| || || ||||| |||| ||| |||| || || ||||||||| Sbjct 61066 GTTGCTCCTATGCCTACCGCATCCACTTCACAGATCATGGGCTTCAACGAGTGCTTTGAA 61125 Query 105578 CCCTACACGACGAACATCTAT 105598 || ||||| | || |||||| Sbjct 61126 CCGTACACCAGCAATATCTAT 61146 >seq537 Length=37262 Score = 109 bits (120), Expect = 6e-19 Identities = 166/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 9695 TTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT 9754 ||||| | ||||||||||||||| ||||||| ||| || || |||| |||||| Sbjct 22656 TTTCCAATGGCATCAATCTCATCGATGAAGATGATACAAGGCGTGTTTTTGCGAGCATTG 22597 Query 9755 TCAAAGAGATCCCGTACACG-CTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 |||||||||| |||||||| ||||| || |||||||||||||| |||||||| | | Sbjct 22596 GCAAAGAGATCTCGTACACGACTTGGA-CCAACACCAACAAACATTTCCACAAATTCAGA 22538 Query 9814 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873 | | ||| || ||| || ||| | || || || | || |||||| || || Sbjct 22537 GCCAGAAACGGAGAAGAAAGGCACACCACTCTCGCCTGCTGTAGCCTTGGCGAGGAGCGT 22478 Query 9874 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 |||||| || || || || | | || ||||| || || ||||| ||||| Sbjct 22477 CTTACCAGTTCCGGGAGGTCCTGACAAGATAGCACCACGAGGGATCTTTGCGCC 22424 >seq1032 Length=45607 Score = 104 bits (114), Expect = 3e-17 Identities = 91/111 (82%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGG 94886 ||||| |||||||||||||| || ||||| ||| | || | ||||| |||||||| || Sbjct 28927 GTTGAAGGTATCTTCTTCTCCGGATCCTT-TGCATCCATCTTCTGGCTGAAGAAGCGTGG 28869 Query 94887 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||||||||| |||||| |||||||||||||| ||||| || ||||| || Sbjct 28868 TCTCATGCCTGGTCTCACGTTCTCCAACGAGCTCATCTCGCGCGACGAAGG 28818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583246021629480