Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq721 165 9e-36 seq1032 125 8e-24 seq11 96.9 4e-15 >seq721 Length=104476 Score = 165 bits (182), Expect = 9e-36 Identities = 496/761 (65%), Gaps = 20/761 (3%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGT----GAGACG 53248 ||||||| || || | || || ||||| ||||| || || | ||| ||||| Sbjct 59780 TCATGCGTGTAGCAGTCGGAATTCACGGAGACGA-TAT---CGAGGCCGCCATCGAGACA 59835 Query 53249 TACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGT 53308 ||| ||| ||| | |||||||| || ||||| | ||||| ||||||| ||||||| Sbjct 59836 TACAACTACATGTCGAATAAGTACTTCACACACGCATCACCAACACTGTTCAGCGCTGGT 59895 Query 53309 ACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGAC 53368 ||| || ||| || | |||||||| | | ||||| || ||| || || Sbjct 59896 ACGCCGAACGGCCAGTTGGCTTCTTGCTTCCTCATCGACATGAAAGACGACAGCATTGAG 59955 Query 53369 GGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGT 53428 || || ||||| || || || || || ||||| ||| | |||||||||||| Sbjct 59956 GGAATTTACGATACACTGAAAATTTGCGCTATGATCTCAAAGAATGCTGGTGGTATCGGT 60015 Query 53429 ATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCC 53488 || |||| || | ||||| | ||| | || || ||||||||| || Sbjct 60016 CTCAACTGTCACAAAATTCGTGCCACCGGATCCTACATTGCTGGCACGAACGGCACATCC 60075 Query 53489 GATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGT 53548 | || | | || ||||| || |||| ||||||||| || || || ||| | || ||| Sbjct 60076 AACGGCCTGATTCCCATGCTTCGTGTCTACAACAACACAGCTCGTTATGTCGATCAAGGT 60135 Query 53549 GGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATG 53608 || ||||| || | || ||||| || |||||||| ||||||||||| | || Sbjct 60136 GGCAACAAGCGTCCTGGCGCTTTTGCCATTTATCTCGAGCCATGGCACGCCGATGTCATT 60195 Query 53609 GAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTT 53668 || | || || || ||| || || | ||||| | ||| || |||||||| Sbjct 60196 TCTTTCATGGATCTACGCAAGAACCACGGAAAGGAAGAAGTTCGCGCTCGCGACCTGTTC 60255 Query 53669 ACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTAC 53728 || |||||||| || || || |||||| | ||||| || ||| || ||| | Sbjct 60256 TTCGCCCTGTGGATCCCCGATCTGTTCATGAAGCGTGTGGAACAGAACGCCGAATGGACC 60315 Query 53729 CTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAG 53788 ||||||||||| |||||||| ||||| || | ||| |||||||| || || | ||| Sbjct 60316 CTGATGTGCCCCAACGAGTGTCCCGGTCTTGCTGATGTGTACGGTGACGAATTCGAGGAG 60375 Query 53789 ATGTA---TCG-GAC--GTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGT 53842 | || ||| || | | | || || ||| ||| ||| || || | Sbjct 60376 CTTTACACTCGCTACGAGAAAGAAGGTCGGGGACGC------GAGACTGTGCGTGCTCAG 60429 Query 53843 GAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTAC 53902 || | ||| |||| || || | |||| |||||| || || | ||| |||| Sbjct 60430 AAGATCTGGTATGCCATTCTGGAAGCCCAGACGGAGACTGGCGGACCTTTCATCCTCTAC 60489 Query 53903 AAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 |||||| | | |||| ||||||||||||||||| |||| Sbjct 60490 AAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAATCTCGG 60530 >seq1032 Length=45607 Score = 125 bits (138), Expect = 8e-24 Identities = 541/832 (65%), Gaps = 49/832 (6%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAG---TTGGTCTTCCCTTCCAACGAGATGTTCTCC 74519 || || || || ||||| || || ||| |||||||| || ||| |||||| |||||| Sbjct 28509 TAGTCTCCAACGCGCTTCTCGAAGAAGAAGTTGGTCTTGCCACCCAGCGAGATATTCTCC 28568 Query 74520 ATCCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGCCATGAGG 74579 || ||||||| ||||| | || ||| | || | || | | |||| ||| Sbjct 28569 ATGAAGTCGAACGGGTTGGTGGCGTTGTAGAACTTCTGGTTGCCGAGC---GCCAGGAGC 28625 Query 74580 CGA---TCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGT 74636 || || |||||||||| ||||||||| ||| || | |||||||| |||| Sbjct 28626 AGACGGTCGGCCACAAATTCAATGTACTGGCACATGAGCTTAGCGTTCATGCCGAGGAGT 28685 Query 74637 TTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAA-GCCCATTGGACAAT 74695 ||| || || || || || | ||||| ||| | |||||| | || | ||| || Sbjct 28686 GCGCAGGGGAGGGCGTCTGTCAGGAACTCCTGCTCGA--TCGCAACGGCC--TCGACGAT 28741 Query 74696 ----CT-TGT--GAATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTC 74747 || ||| || | ||||| ||||| || | | ||||||||||| | ||| | | Sbjct 28742 GATGCTCTGTACGACAGCCTTTG--AGGGC--TTGTTCTTCAGGTGAGAGAACAGCAGGC 28797 Query 74748 ACGGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGG 74807 ||| | || || ||| |||||| || | || | || || || |||| || Sbjct 28798 ACG-CGAAGTCGGTGTGCATGCCTTCGTCGCGCGAGATGAGCTCGTTGGAGAACGTGAGA 28856 Query 74808 CCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAG 74867 |||||||| || ||||||||||||| ||| ||||||| ||||| || ||||||| Sbjct 28857 CCAGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGATGCAAAGGATCCGGAGAAGAAG 28916 Query 74868 ATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC--- 74924 || ||||| || || ||||| | || || ||||| ||| | | ||| Sbjct 28917 ATACCTTCAACTGCAGCGAAGGCAATCAGTCGCATGGCGAA-GGTCGAGCTCTTGTCGCT 28975 Query 74925 -ATCCAAGTCTGA--GCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981 ||||| || || ||||| || || |||| || ||||| | | ||||| || Sbjct 28976 GATCCA--TCGGAGTGCCCAGTCCGCCTTTCTGCGGATGCAAGGGATATTGTCGATGGCG 29033 Query 74982 TGGAAGAGGCTTGCCTTC--TCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGT 75039 | ||| ||| || ||| | || ||| || | | | |||| || | || |||| Sbjct 29034 TTGAACAGGTATG--TTCGTTGTTTGGGCTCGCTAATGTATGTGTCGATGAGGAGGGAGT 29091 Query 75040 ACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTG 75099 | |||||||| || || ||| | | |||| | | ||||| | || || || | Sbjct 29092 ATGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAATCCATAGAAGCATCGTGCTTCGG 29151 Query 75100 CAATCTGT-ACATC--CTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCG 75156 | |||| || || | |||| ||| | | ||||| |||||||||| || | Sbjct 29152 GTA-CTGTCACTTCGGCGCTGAAGCGTTC--CACCAGGTTCTCGTTGACGATGCCATCTG 29208 Query 75157 AGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGA---GTT 75213 | |||||||| || || || || | ||| ||| ||||| ||||| |||| | | Sbjct 29209 ATGCGGCGAAGAATGCAAGAACATGTGAGATGAAGAAACGCTCGTCGTCGGTGAGGCGCT 29268 Query 75214 TGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 ||| ||| || | ||| ||| | | ||||||||||||| | |||||||| Sbjct 29269 TGTTCCAGTCATGCAGATCCTTTGATAGATCAATCTCCTCGGCAGTCCAGAA 29320 >seq11 Length=17923 Score = 96.9 bits (106), Expect = 4e-15 Identities = 179/263 (68%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 |||||||| ||||| ||||| ||||| || || ||||| || || | |||| ||| | | Sbjct 12022 CCAGTTCCAATACCTTCTGCGCCATTGATGAGGATCATAGGAACAATTGGAAAGTACAGC 11963 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 || ||||| | || | || ||||| | | ||| || | | | ||| ||||| Sbjct 11962 TCCGGCTCTATCTCCTTGCCATCGTCAAGGTTGGGCTTCAGAAGAGGTTCGTCCTTCGGA 11903 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 |||||||||| | | |||| || | || |||| ||||||| ||| || || Sbjct 11902 TCGAATATGTGTCGAGCAAAGGGTGACAGTCTCGTATAAATATAACGAGCGCTGGCTGCG 11843 Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391 || | ||||| ||||| | || || | ||||| || |||| | ||||| |||| Sbjct 11842 TCGCTACCACCCTGGAGACGAGAGCCAAAATTGCCACTTGGTTCCAGAATGTTCATGTTG 11783 Query 117392 TTGGCGCCCACAAAGTTTTGAGC 117414 |||| ||||| ||||| || || Sbjct 11782 TTGGACCCCACGAAGTTCTGCGC 11760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547202134914600