Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017-
04-24] 2,027 sequences; 27,920,864 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq721 165 9e-36
seq1032 125 8e-24
seq11 96.9 4e-15
>seq721
Length=104476
Score = 165 bits (182), Expect = 9e-36
Identities = 496/761 (65%), Gaps = 20/761 (3%)
Strand=Plus/Plus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGT----GAGACG 53248
||||||| || || | || || ||||| ||||| || || | ||| |||||
Sbjct 59780 TCATGCGTGTAGCAGTCGGAATTCACGGAGACGA-TAT---CGAGGCCGCCATCGAGACA 59835
Query 53249 TACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGT 53308
||| ||| ||| | |||||||| || ||||| | ||||| ||||||| |||||||
Sbjct 59836 TACAACTACATGTCGAATAAGTACTTCACACACGCATCACCAACACTGTTCAGCGCTGGT 59895
Query 53309 ACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGAC 53368
||| || ||| || | |||||||| | | ||||| || ||| || ||
Sbjct 59896 ACGCCGAACGGCCAGTTGGCTTCTTGCTTCCTCATCGACATGAAAGACGACAGCATTGAG 59955
Query 53369 GGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGT 53428
|| || ||||| || || || || || ||||| ||| | ||||||||||||
Sbjct 59956 GGAATTTACGATACACTGAAAATTTGCGCTATGATCTCAAAGAATGCTGGTGGTATCGGT 60015
Query 53429 ATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCC 53488
|| |||| || | ||||| | ||| | || || ||||||||| ||
Sbjct 60016 CTCAACTGTCACAAAATTCGTGCCACCGGATCCTACATTGCTGGCACGAACGGCACATCC 60075
Query 53489 GATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGT 53548
| || | | || ||||| || |||| ||||||||| || || || ||| | || |||
Sbjct 60076 AACGGCCTGATTCCCATGCTTCGTGTCTACAACAACACAGCTCGTTATGTCGATCAAGGT 60135
Query 53549 GGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATG 53608
|| ||||| || | || ||||| || |||||||| ||||||||||| | ||
Sbjct 60136 GGCAACAAGCGTCCTGGCGCTTTTGCCATTTATCTCGAGCCATGGCACGCCGATGTCATT 60195
Query 53609 GAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTT 53668
|| | || || || ||| || || | ||||| | ||| || ||||||||
Sbjct 60196 TCTTTCATGGATCTACGCAAGAACCACGGAAAGGAAGAAGTTCGCGCTCGCGACCTGTTC 60255
Query 53669 ACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTAC 53728
|| |||||||| || || || |||||| | ||||| || ||| || ||| |
Sbjct 60256 TTCGCCCTGTGGATCCCCGATCTGTTCATGAAGCGTGTGGAACAGAACGCCGAATGGACC 60315
Query 53729 CTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAG 53788
||||||||||| |||||||| ||||| || | ||| |||||||| || || | |||
Sbjct 60316 CTGATGTGCCCCAACGAGTGTCCCGGTCTTGCTGATGTGTACGGTGACGAATTCGAGGAG 60375
Query 53789 ATGTA---TCG-GAC--GTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGT 53842
| || ||| || | | | || || ||| ||| ||| || || |
Sbjct 60376 CTTTACACTCGCTACGAGAAAGAAGGTCGGGGACGC------GAGACTGTGCGTGCTCAG 60429
Query 53843 GAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTAC 53902
|| | ||| |||| || || | |||| |||||| || || | ||| ||||
Sbjct 60430 AAGATCTGGTATGCCATTCTGGAAGCCCAGACGGAGACTGGCGGACCTTTCATCCTCTAC 60489
Query 53903 AAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943
|||||| | | |||| ||||||||||||||||| ||||
Sbjct 60490 AAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAATCTCGG 60530
>seq1032
Length=45607
Score = 125 bits (138), Expect = 8e-24
Identities = 541/832 (65%), Gaps = 49/832 (6%)
Strand=Plus/Plus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAG---TTGGTCTTCCCTTCCAACGAGATGTTCTCC 74519
|| || || || ||||| || || ||| |||||||| || ||| |||||| ||||||
Sbjct 28509 TAGTCTCCAACGCGCTTCTCGAAGAAGAAGTTGGTCTTGCCACCCAGCGAGATATTCTCC 28568
Query 74520 ATCCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGCCATGAGG 74579
|| ||||||| ||||| | || ||| | || | || | | |||| |||
Sbjct 28569 ATGAAGTCGAACGGGTTGGTGGCGTTGTAGAACTTCTGGTTGCCGAGC---GCCAGGAGC 28625
Query 74580 CGA---TCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGT 74636
|| || |||||||||| ||||||||| ||| || | |||||||| ||||
Sbjct 28626 AGACGGTCGGCCACAAATTCAATGTACTGGCACATGAGCTTAGCGTTCATGCCGAGGAGT 28685
Query 74637 TTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAA-GCCCATTGGACAAT 74695
||| || || || || || | ||||| ||| | |||||| | || | ||| ||
Sbjct 28686 GCGCAGGGGAGGGCGTCTGTCAGGAACTCCTGCTCGA--TCGCAACGGCC--TCGACGAT 28741
Query 74696 ----CT-TGT--GAATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTC 74747
|| ||| || | ||||| ||||| || | | ||||||||||| | ||| | |
Sbjct 28742 GATGCTCTGTACGACAGCCTTTG--AGGGC--TTGTTCTTCAGGTGAGAGAACAGCAGGC 28797
Query 74748 ACGGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGG 74807
||| | || || ||| |||||| || | || | || || || |||| ||
Sbjct 28798 ACG-CGAAGTCGGTGTGCATGCCTTCGTCGCGCGAGATGAGCTCGTTGGAGAACGTGAGA 28856
Query 74808 CCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAG 74867
|||||||| || ||||||||||||| ||| ||||||| ||||| || |||||||
Sbjct 28857 CCAGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGATGCAAAGGATCCGGAGAAGAAG 28916
Query 74868 ATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC--- 74924
|| ||||| || || ||||| | || || ||||| ||| | | |||
Sbjct 28917 ATACCTTCAACTGCAGCGAAGGCAATCAGTCGCATGGCGAA-GGTCGAGCTCTTGTCGCT 28975
Query 74925 -ATCCAAGTCTGA--GCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981
||||| || || ||||| || || |||| || ||||| | | ||||| ||
Sbjct 28976 GATCCA--TCGGAGTGCCCAGTCCGCCTTTCTGCGGATGCAAGGGATATTGTCGATGGCG 29033
Query 74982 TGGAAGAGGCTTGCCTTC--TCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGT 75039
| ||| ||| || ||| | || ||| || | | | |||| || | || ||||
Sbjct 29034 TTGAACAGGTATG--TTCGTTGTTTGGGCTCGCTAATGTATGTGTCGATGAGGAGGGAGT 29091
Query 75040 ACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTG 75099
| |||||||| || || ||| | | |||| | | ||||| | || || || |
Sbjct 29092 ATGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAATCCATAGAAGCATCGTGCTTCGG 29151
Query 75100 CAATCTGT-ACATC--CTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCG 75156
| |||| || || | |||| ||| | | ||||| |||||||||| || |
Sbjct 29152 GTA-CTGTCACTTCGGCGCTGAAGCGTTC--CACCAGGTTCTCGTTGACGATGCCATCTG 29208
Query 75157 AGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGA---GTT 75213
| |||||||| || || || || | ||| ||| ||||| ||||| |||| | |
Sbjct 29209 ATGCGGCGAAGAATGCAAGAACATGTGAGATGAAGAAACGCTCGTCGTCGGTGAGGCGCT 29268
Query 75214 TGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265
||| ||| || | ||| ||| | | ||||||||||||| | ||||||||
Sbjct 29269 TGTTCCAGTCATGCAGATCCTTTGATAGATCAATCTCCTCGGCAGTCCAGAA 29320
>seq11
Length=17923
Score = 96.9 bits (106), Expect = 4e-15
Identities = 179/263 (68%), Gaps = 0/263 (0%)
Strand=Plus/Minus
Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211
|||||||| ||||| ||||| ||||| || || ||||| || || | |||| ||| | |
Sbjct 12022 CCAGTTCCAATACCTTCTGCGCCATTGATGAGGATCATAGGAACAATTGGAAAGTACAGC 11963
Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271
|| ||||| | || | || ||||| | | ||| || | | | ||| |||||
Sbjct 11962 TCCGGCTCTATCTCCTTGCCATCGTCAAGGTTGGGCTTCAGAAGAGGTTCGTCCTTCGGA 11903
Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331
|||||||||| | | |||| || | || |||| ||||||| ||| || ||
Sbjct 11902 TCGAATATGTGTCGAGCAAAGGGTGACAGTCTCGTATAAATATAACGAGCGCTGGCTGCG 11843
Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391
|| | ||||| ||||| | || || | ||||| || |||| | ||||| ||||
Sbjct 11842 TCGCTACCACCCTGGAGACGAGAGCCAAAATTGCCACTTGGTTCCAGAATGTTCATGTTG 11783
Query 117392 TTGGCGCCCACAAAGTTTTGAGC 117414
|||| ||||| ||||| || ||
Sbjct 11782 TTGGACCCCACGAAGTTCTGCGC 11760
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547202134914600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |