Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1032 107 3e-18 >seq1032 Length=45607 Score = 107 bits (118), Expect = 3e-18 Identities = 338/517 (65%), Gaps = 10/517 (2%) Strand=Plus/Plus Query 46672 TCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCG 46731 ||||| || || ||||| |||||||| || |||||||| || ||||| || || | || Sbjct 28839 TCGTTGGAGAACGTGAGACCAGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGATGCA 28898 Query 46732 AAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA 46791 || ||||| || ||||| || ||||| || || ||||| || | |||| | || | Sbjct 28899 AAGGATCCGGAGAAGAAGATACCTTCAACTGCAGCGAAGGCAATCAGTCGCATGGCGAAG 28958 Query 46792 CTGGCATCATTATGA---ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGC 46848 | | || | ||||| | | ||||| || |||||| | | ||||| Sbjct 28959 GTCGAGCTCTTGTCGCTGATCCATCGGAGTGCCCAGTCCGCCTTTCTGCGGATGCAAGGG 29018 Query 46849 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCT 46908 || | || || || || || || | || || | || ||| ||||| || Sbjct 29019 ATATTGTCGATGGCGTTGAACAGGTATGTTCGTTGTTTGGGCTCGCTAATGTATGTGTCG 29078 Query 46909 ATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAA 46968 || | || || | || || || ||||| || || ||||| ||||| || || Sbjct 29079 ATGAGGAGGGAGTATGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAATCCATAGAAG 29138 Query 46969 CATCTTGCTTCAGTAATCTGT-ACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCAC 47027 |||| |||||| | | |||| || || | | || ||||| || ||||| || || Sbjct 29139 CATCGTGCTTCGGGTA-CTGTCACTTCGGCGCTGAAGCGTTCCACCAGGTTCTCGTTGAC 29197 Query 47028 TATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATAT---TTTTCATC 47084 || ||||| || || || ||||| | |||||| || || | | || || Sbjct 29198 GATGCCATCTGATGCGGCGAAGAATGCAAGAACATGTGAGATGAAGAAACGCTCGTCGTC 29257 Query 47085 GGT-AGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCC 47143 ||| || | | || |||||||||| | ||| ||||||| ||| | || || || |||| Sbjct 29258 GGTGAGGC-GCTTGTTCCAGTCATGCAGATCCTTTGATAGATCAATCTCCTCGGCAGTCC 29316 Query 47144 AGAATGACGCCTCTGCTTTTTTATACATATTCCATAT 47180 ||||||| || || || || || ||||| |||||||| Sbjct 29317 AGAATGATGCTTCGGCCTTCTTGTACATGTTCCATAT 29353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712916336024640