Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017-
04-24] 2,027 sequences; 27,920,864 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq1917 120 6e-22
seq1019 89.7 1e-12
seq1004 87.8 4e-12
>seq1917
Length=9250
Score = 120 bits (132), Expect = 6e-22
Identities = 160/220 (73%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||||| || | |||| || | ||||| || || || ||||||||||| |
Sbjct 8948 CCACCACGCAAACGCAACACCAAGTGCAGAGTGCTCTCCTTCTGAATGTTGTAGTCTGAC 9007
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
| || || ||||| || | || || || || || |||| ||| || ||||| ||
Sbjct 9008 AAAGTACGACCATCTTCCAACTGCTTGCCTGCGAAAATCAGACGCTGCTGGTCCGGTGGG 9067
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| |||||||||||||| ||| ||||| || || | ||||| ||||| || | ||| ||
Sbjct 9068 ATTCCCTCCTTGTCTTGAATC-TTGCTCTTCACATTGTCGATCGTGTCTGAGGATTCCAC 9126
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091
||| || || |||||||| || || | ||||| ||||||
Sbjct 9127 TTCTAGCGTAATCGTCTTTCCTGTGAGTGTCTTGACGAAT 9166
>seq1019
Length=44428
Score = 89.7 bits (98), Expect = 1e-12
Identities = 120/169 (71%), Gaps = 15/169 (9%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| || || ||||||||||||| |||||||| || ||||| || || || |||||||||
Sbjct 44413 TCCTTCTGAATGTTGTAGTCAGAGAGCGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAG 44354
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
||||| || || ||||| ||||| |||||| | |||| ||| |
Sbjct 44353 ATCAAGCGCTGCTGGTCCGGAGGAATGCCCTCC--GACTTG-------------ACGTTG 44309
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCA 283077
|| || || || |||| || || ||||| ||||| ||||| || ||||
Sbjct 44308 TCAATCGTATCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCA 44260
>seq1004
Length=188354
Score = 87.8 bits (96), Expect = 4e-12
Identities = 283/428 (66%), Gaps = 30/428 (7%)
Strand=Plus/Plus
Query 99860 AAACTCGTTCGCGTTTGGGACCGTTGCCGAAAGAAATA-CACA-TCGCATGGTATCCGGC 99917
|||||||| || |||||| || ||||| || || ||| || | || |||| | ||||
Sbjct 136155 AAACTCGTACGTGTTTGGCACAGTTGCAGATAGGCATATCAAAGTCACATGCT--CCGGA 136212
Query 99918 AAAATGATGATTGACTCTTCCCATACTGATCCTCGTGATGGATCGTTCAGATAGTGAATC 99977
| || ||||| ||||||||| ||| || || | || |||| ||| || | |
Sbjct 136213 AGCATAATGATGACCTCTTCCCACACTACACCACGCTCCGAGTCATTCACATAATGTACC 136272
Query 99978 TCATCAAAGATGACCCATTTTACGTCGTGAAT--TCTCTGGTCCCTTTTGATA-ACCATT 100034
|| ||||||||||| ||| ||||| |||| || | ||| |||| | |||
Sbjct 136273 TCGTCAAAGATGACAAATTCCACGTCTCGAATGAGATCGGCTCC---ACGATAGAGCATA 136329
Query 100035 ATTCTGAAGATTTCCGTCGTCATGATTAACAATTTAGCGGTTTCGTTC--TTCACAACAT 100092
| || ||||| || || |||||||| | | |||| || || || || ||||
Sbjct 136330 CTCCTCAAGATCTCTGTAGTCATGATCAGACAGCTAGC--TTCCGGTCGTATCTGCACAT 136387
Query 100093 CGCCTGTGATGATTCCGACGTTTTCTGCACCGAATTTAGAACTGAAGTCTTTGTATTTCT 100152
| || || | || ||||||| || |||||| ||| |||||| ||||||
Sbjct 136388 CTCCCGTCAGAATGCCGACGT------CATCGAATTCCAAACGGAAGTCGCGAAATTTCT 136441
Query 100153 GGTTACTGATAGCCTTTAGAGGCGCTGTATAGAT-------AACCCGTGTTTCATCTGAA 100205
||||||||| ||||| | || | ||| || || | ||| || || |
Sbjct 136442 GGTTACTGAGCGCCTTGATGGGAGATGTGTAAATGGCTTTGGTCATGTGCTTGGTCGCTA 136501
Query 100206 ATGAAATACGCGTATTCTGCGACCACAGT-TTTCCCGCTTGATGTATGCGCTGCAACGAA 100264
| | |||| ||||||||||| || || || ||||| || || || || |||||||| ||
Sbjct 136502 AGGCAATA-GCGTATTCTGCAACGACTGTCTTTCCTGC-AGACGTGTGGGCTGCAACAAA 136559
Query 100265 TACGGAAT 100272
|| ||||
Sbjct 136560 GACAGAAT 136567
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046712015201658
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |