Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1917 120 6e-22 seq1019 89.7 1e-12 seq1004 87.8 4e-12 >seq1917 Length=9250 Score = 120 bits (132), Expect = 6e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||||| || | |||| || | ||||| || || || ||||||||||| | Sbjct 8948 CCACCACGCAAACGCAACACCAAGTGCAGAGTGCTCTCCTTCTGAATGTTGTAGTCTGAC 9007 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || ||||| || | || || || || || |||| ||| || ||||| || Sbjct 9008 AAAGTACGACCATCTTCCAACTGCTTGCCTGCGAAAATCAGACGCTGCTGGTCCGGTGGG 9067 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||||||||| ||| ||||| || || | ||||| ||||| || | ||| || Sbjct 9068 ATTCCCTCCTTGTCTTGAATC-TTGCTCTTCACATTGTCGATCGTGTCTGAGGATTCCAC 9126 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 ||| || || |||||||| || || | ||||| |||||| Sbjct 9127 TTCTAGCGTAATCGTCTTTCCTGTGAGTGTCTTGACGAAT 9166 >seq1019 Length=44428 Score = 89.7 bits (98), Expect = 1e-12 Identities = 120/169 (71%), Gaps = 15/169 (9%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || ||||||||||||| |||||||| || ||||| || || || ||||||||| Sbjct 44413 TCCTTCTGAATGTTGTAGTCAGAGAGCGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAG 44354 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| || || ||||| ||||| |||||| | |||| ||| | Sbjct 44353 ATCAAGCGCTGCTGGTCCGGAGGAATGCCCTCC--GACTTG-------------ACGTTG 44309 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCA 283077 || || || || |||| || || ||||| ||||| ||||| || |||| Sbjct 44308 TCAATCGTATCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCA 44260 >seq1004 Length=188354 Score = 87.8 bits (96), Expect = 4e-12 Identities = 283/428 (66%), Gaps = 30/428 (7%) Strand=Plus/Plus Query 99860 AAACTCGTTCGCGTTTGGGACCGTTGCCGAAAGAAATA-CACA-TCGCATGGTATCCGGC 99917 |||||||| || |||||| || ||||| || || ||| || | || |||| | |||| Sbjct 136155 AAACTCGTACGTGTTTGGCACAGTTGCAGATAGGCATATCAAAGTCACATGCT--CCGGA 136212 Query 99918 AAAATGATGATTGACTCTTCCCATACTGATCCTCGTGATGGATCGTTCAGATAGTGAATC 99977 | || ||||| ||||||||| ||| || || | || |||| ||| || | | Sbjct 136213 AGCATAATGATGACCTCTTCCCACACTACACCACGCTCCGAGTCATTCACATAATGTACC 136272 Query 99978 TCATCAAAGATGACCCATTTTACGTCGTGAAT--TCTCTGGTCCCTTTTGATA-ACCATT 100034 || ||||||||||| ||| ||||| |||| || | ||| |||| | ||| Sbjct 136273 TCGTCAAAGATGACAAATTCCACGTCTCGAATGAGATCGGCTCC---ACGATAGAGCATA 136329 Query 100035 ATTCTGAAGATTTCCGTCGTCATGATTAACAATTTAGCGGTTTCGTTC--TTCACAACAT 100092 | || ||||| || || |||||||| | | |||| || || || || |||| Sbjct 136330 CTCCTCAAGATCTCTGTAGTCATGATCAGACAGCTAGC--TTCCGGTCGTATCTGCACAT 136387 Query 100093 CGCCTGTGATGATTCCGACGTTTTCTGCACCGAATTTAGAACTGAAGTCTTTGTATTTCT 100152 | || || | || ||||||| || |||||| ||| |||||| |||||| Sbjct 136388 CTCCCGTCAGAATGCCGACGT------CATCGAATTCCAAACGGAAGTCGCGAAATTTCT 136441 Query 100153 GGTTACTGATAGCCTTTAGAGGCGCTGTATAGAT-------AACCCGTGTTTCATCTGAA 100205 ||||||||| ||||| | || | ||| || || | ||| || || | Sbjct 136442 GGTTACTGAGCGCCTTGATGGGAGATGTGTAAATGGCTTTGGTCATGTGCTTGGTCGCTA 136501 Query 100206 ATGAAATACGCGTATTCTGCGACCACAGT-TTTCCCGCTTGATGTATGCGCTGCAACGAA 100264 | | |||| ||||||||||| || || || ||||| || || || || |||||||| || Sbjct 136502 AGGCAATA-GCGTATTCTGCAACGACTGTCTTTCCTGC-AGACGTGTGGGCTGCAACAAA 136559 Query 100265 TACGGAAT 100272 || |||| Sbjct 136560 GACAGAAT 136567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046712015201658