Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1917 113 4e-20 seq1019 109 5e-19 >seq1917 Length=9250 Score = 113 bits (124), Expect = 4e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || | ||| ||||||| ||||| |||||||||||||||||||| ||||| || Sbjct 8948 CCACCACGCAAACGCAACACCAAGTGCAGAGTGCTCTCCTTCTGAATGTTGTAGTCTGAC 9007 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || | ||||||||| ||||| ||||| ||||| ||||||| || Sbjct 9008 AAAGTACGACCATCTTCCAACTGCTTGCCTGCGAAAATCAGACGCTGCTGGTCCGGTGGG 9067 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| || || |||| || | | | ||||| || ||||| Sbjct 9068 ATTCCCTCCTTGTCTTGAATCTTGCTCTTC-ACATTGTCGATCGTGTCTGAGGATTCCAC 9126 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 || | ||| ||||| || || || || ||||| ||||| Sbjct 9127 TTCTAGCGTAATCGTCTTTCCTGTGAGTGTCTTGACGAA 9165 >seq1019 Length=44428 Score = 109 bits (120), Expect = 5e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 || || || ||| ||||||||||||||| ||||| ||||| ||||| |||| |||||| Sbjct 44428 AGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTGCGACCGTCCTCGAGC 44369 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 ||||||||||| || |||| |||||| ||||||| |||| || |||| Sbjct 44368 TGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGAGGAATGCCCTCC 44321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462292286372400