Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20curreyana_20[genbank_20GCA_5F002162495.1_202017- 05-31] 1,623 sequences; 40,749,071 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq29 104 2e-17 >seq29 Length=315494 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || ||||| | || ||||| ||||| ||||||||||| Sbjct 102682 CCACCACGGAGACGAAGGACCAAATGTAAAGTCGATTCCTTTTGAATGTTGTAATCCGAA 102741 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| | || | || || ||||| ||||||||| |||| |||||||| |||||||| || Sbjct 102742 AGTGTACGTCCA-TCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCGGGTGG 102800 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || || || || ||| |||| | || | ||||||| | ||| || Sbjct 102801 GATACCCTCCTTATCTTGGATCTTTGACTTTACATTATCGATAGTGTCCGATGATTCAAC 102860 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | |||||| ||||| | ||| || ||||| || |||||| Sbjct 102861 CTCCAGGGTGATCGTCTTTCCGGTAAGTGTCTTGACGAAAATCTGCATA 102909 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 ||||| |||| ||||| || || || || ||||| ||| | |||| ||||| Sbjct 102928 ACTAAGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAAAGGGTGCGACCATCTTCA 102987 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 |||||||| ||||| |||||| |||||| ||||||||||| |||||||| || || | Sbjct 102988 AGTTGTTTGCCAGCGAAGATCAAACGTTGTTGATCGGGAGGGATGCCTTCCTTATCTTGA 103047 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || ||| | | || | ||||| | | ||| ||||| | ||| | ||||| Sbjct 103048 ATCTTCGATTTAACGTTGTCGATGGTGTCTGAAGATTCGACTTCGAGAGTGATGGTCTTT 103107 Query 143156 CCGGTCAATGTTTTTACGAATAT 143178 ||||| | || || |||| ||| Sbjct 103108 CCGGTAAGGGTCTTAACGACTAT 103130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507004113945360