Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20curreyana_20[genbank_20GCA_5F002162495.1_202017- 05-31] 1,623 sequences; 40,749,071 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq29 174 1e-37 seq54 100 2e-15 seq127 86.0 5e-11 >seq29 Length=315494 Score = 174 bits (192), Expect = 1e-37 Identities = 397/591 (67%), Gaps = 6/591 (1%) Strand=Plus/Plus Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053 ||| ||||| ||||| || || || || |||||| ||| | | | ||| || | | Sbjct 24270 TATTGGTATCGATTTGGGTACTACCTACTCTTGTGTGGGTATCTTCCGTGATGATAGAAT 24329 Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 |||||||| ||||| || ||||| ||| | || || ||||| | ||| | ||||| || Sbjct 24330 CGAAATTATCGCCAACGACCAAGGAAACCGTACCACACCATCCTTCGTTGCCTTCACAGA 24389 Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173 ||||| | || | || ||||| || || |||||| | | || || | ||| || Sbjct 24390 TACTGAGCGCTTGATCGGAGATGCCGCTAAGAATCAAGTCGCCATGAACCCAATCAACAC 24449 Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCAGGCAG 550232 | || |||||||| ||||| || || | ||||| | ||| | ||||| || | Sbjct 24450 CGTCTTCGATGCTAAGCGTTTGATCGGTCGCAAGTTCGCA-GATGCTGAAGTTCAAGCCG 24508 Query 550233 ATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CT 550291 |||||||||| | || ||| | | || | | | ||||| || ||||| | | Sbjct 24509 ATATGAAGCACTTCCCATTCAAGGTCATTGACCGTGCCGGAAAGCCAGTCATTGAGGTCG 24568 Query 550292 ACTCATGAAGGATCTGTT-AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 | | | |||| | |||||||| |||||||| |||| || || ||| | || | Sbjct 24569 AGT--TCAAGGGAGAGAACAAACAATTCACACCAGAAGAAATCTCTTCCATGATCTTGGT 24626 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 || |||| | | || || |||| | ||| | |||| | || || | || Sbjct 24627 CAAGATGAGAGAGACCGCTGAGGCTTACCTCGGTGCAACTGTTAACAACGCCGTCGTCAC 24686 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 || ||||| || || | || ||||||||||||||||| || || ||||| | ||||| Sbjct 24687 AGTCCCAGCTTACTTCACAGATTCACAACGTCAAGCTACCAAGGACGCTGGTCTCATTGC 24746 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 ||| ||||| ||||||||||| |||||||| ||||| || ||||| |||| || || | Sbjct 24747 TGGTCTTAACGTTCTTCGTATCATCAATGAGCCTACCGCAGCTGCCATTGCTTACGGTTT 24806 Query 550531 TGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 || || | | || || | ||| || |||||||| ||| ||| || Sbjct 24807 GGACAAGAAGATCGAGGGTGAGCGTAACGTTCTCATCTTCGATCTTGGTGG 24857 Score = 102 bits (112), Expect = 7e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| || | || | ||| ||||| || |||||||||||| | || ||||| Sbjct 102463 AGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCGAAAGGGTTCTG 102522 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 || || | || ||||| |||||||| | || ||| |||||||| ||||| || || Sbjct 102523 CCGTCCTCCAACTGCTTTCCTGCAAAAATCAATCGTTGTTGATCAGGTGGAATGCCCTCC 102582 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 || || ||||| ||| ||| || ||||| ||||| | || | || ||| | || Sbjct 102583 TTGTCCTGAATCTTTGATTTAACATTATCAATGGTATCTG-ACGATTCCACTTCTAATGT 102641 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || || |||||||| | || || || || ||||||||| Sbjct 102642 AATTGTCTTACCAGTTAAGGTCTTGACAAAGATTTGCATA 102681 >seq54 Length=229993 Score = 100 bits (110), Expect = 2e-15 Identities = 116/155 (75%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 550379 GTTGGTCAAGAAGTT-ACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437 ||||| ||||||| | || | || || || ||||| ||||| || || || ||| || Sbjct 186020 GTTGGGCAAGAAGGTCACAAAAGCCGTCATCACTGTTCCAGCTTACTTCAACGACAACCA 186079 Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497 ||||||||| || || |||||||| || ||||| || || || || ||||| ||||| Sbjct 186080 ACGTCAAGCCACCAAGGATGCTGGTGCCATCGCTGGTCTAAACGTCCTCCGTATCATCAA 186139 Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532 || ||||| |||||||| |||| || || |||| Sbjct 186140 CGAGCCTACCGCTGCTGCCATTGCTTACGGTCTTG 186174 >seq127 Length=103845 Score = 86.0 bits (94), Expect = 5e-11 Identities = 147/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 399569 ATATGACAAGGAGGTAATGCCAtttttttAATGTCGACAGGATTCCATAAACTTATAATT 399628 || |||||||| ||||| |||||| || || || || ||||||| ||| | ||| Sbjct 16187 ATGTGACAAGGTGGTAAAGCCATTAACTTGATATCTGCAACATTCCATGCACTCAGAATA 16128 Query 399629 ATTCTGCGATCATTTGGATTATTCATAATAGCATCAATACAATTATT--TAATTGATCAA 399686 || || | ||| ||| |||||| | || || |||||||| || |||||||| Sbjct 16127 ATCCTCCTATCCCATGGGTTATTCTT--TAATTTCCATACAATTTCCGCTAGTTGATCAA 16070 Query 399687 TTCCTTGATCATGA-TAATCTGTTTTACAATTATCATATTTGGCTCCGAAATGTCTCATT 399745 ||||| || || ||||| || | | || | |||||||| |||||||||| | | Sbjct 16069 CACCTTG-TCCTGTGTAATCCGTCTCAGCATCAATGTATTTGGCACCGAAATGTCGCCAT 16011 Query 399746 TGAAATCCATAACCGGGGCCAATATCTCC 399774 ||||||||||| | || || | |||||| Sbjct 16010 TGAAATCCATACACAGGACCTAAATCTCC 15982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029210168440270