Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20curreyana_20[genbank_20GCA_5F002162495.1_202017- 05-31] 1,623 sequences; 40,749,071 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq29 114 1e-20 >seq29 Length=315494 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||| || | ||| ||| |||||||| || ||||||| || ||| | Sbjct 102465 ACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCGAAAGGGTTCTGCC 102524 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || | || || || ||| | ||||||| ||| ||||| || ||||| ||||| || Sbjct 102525 GTCCTCCAACTGCTTTCCTGCAAAAATCAATCGTTGTTGATCAGGTGGAATGCCCTCCTT 102584 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || ||| |||| ||| ||| | || | || || || ||| ||||| | || | Sbjct 102585 GTCCTG-AATCTTTGATTTAACATTATCAATGGTATCTGACGATTCCACTTCTAATGTAA 102643 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || ||||||||||| || ||||| || ||||| Sbjct 102644 TTGTCTTACCAGTTAAGGTCTTGACAAAGATTTGCAT 102680 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||||||| | || ||||| ||||||||||| ||||||| || || || Sbjct 102693 ACGAAGGACCAAATGTAAAGTCGATTCCTTTTGAATGTTGTAATCCGAAAGTGTACGTCC 102752 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| || |||||| | || | | ||| ||||| || || |||||||| || Sbjct 102753 ATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCGGGTGGGATACCCTCCTT 102812 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | ||| || ||| | || | |||||| || ||| || || || || || Sbjct 102813 ATCTTGGATCTTTGACTTTACATTATCGATAGTGTCCGATGATTCAACCTCCAGGGTGAT 102872 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | || || || || |||||||| Sbjct 102873 CGTCTTTCCGGTAAGTGTCTTGACGAAAATCTGCAT 102908 Score = 105 bits (116), Expect = 5e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || || ||||| || || || || || || || || || | || ||||||| ||| Sbjct 102925 AGGACTAAGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAAAGGGTGCGACCATCT 102984 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || |||||||||||||| | ||||| | ||| ||||| || || || || || || ||| Sbjct 102985 TCAAGTTGTTTGCCAGCGAAGATCAAACGTTGTTGATCGGGAGGGATGCCTTCCTTATCT 103044 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| || | ||| || | || | ||||| ||| ||| ||||| ||||| || || Sbjct 103045 TG-AATCTTCGATTTAACGTTGTCGATGGTGTCTGAAGATTCGACTTCGAGAGTGATGGT 103103 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATAT 29780 || || || | ||| ||||| | ||| Sbjct 103104 CTTTCCGGTAAGGGTCTTAACGACTAT 103130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385211580243843