Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20curreyana_20[genbank_20GCA_5F002162495.1_202017- 05-31] 1,623 sequences; 40,749,071 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq158 127 1e-24 seq29 127 1e-24 seq32 84.2 1e-11 >seq158 Length=74113 Score = 127 bits (140), Expect = 1e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| ||||| ||||| ||||| ||||| || || Sbjct 63356 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCG 63297 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || || ||||| Sbjct 63296 GACACCATCGACAATGTCAAGTCCAAGA-TCCAGGACAAGGAGGGAATTCCACCCGATCA 63238 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| || || || ||||| || ||||| ||||| | ||||| | ||||||||| Sbjct 63237 ACAGCGATTGATCTTCGCCGGAAAGCAACTAGAAGATGGTCGCACCCTTTCCGATTACAA 63178 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 ||| ||||| ||||| || | || || || ||| Sbjct 63177 CATCCAAAAGGAGTCTACTCTTCACTTGGTGTTA 63144 >seq29 Length=315494 Score = 127 bits (140), Expect = 1e-24 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || || ||||| |||||||| || || ||||| || || Sbjct 102908 ATGCAGATTTTCGTCAAGACACTTACCGGAAAGACGATCACCCTGGAGGTTGAATCATCG 102849 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | |||| ||| || || || || ||| | || || |||||| Sbjct 102848 GACACTATCGATAATGTAAAGTCAAAGATCCAAGATAAGGAGGGTATCCCACCCGATCAA 102789 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTACA 23788 || ||| | || ||||| || || ||||| || || | ||| |||||| || |||||| Sbjct 102788 CAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGACGTACACTTTCGG--ATTACA 102731 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||| ||||| || || || |||||||| || Sbjct 102730 ACATTCAAAAGGAATCGACTTTACATTTGGT 102700 Score = 111 bits (122), Expect = 1e-19 Identities = 146/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 23621 TCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTG 23680 ||||||| ||||| || ||||| || |||||||||||||| || || | ||||| | | Sbjct 103126 TCGTTAAGACCCTTACCGGAAAGACCATCACTCTCGAAGTCGAATCTTCAGACACCATCG 103067 Query 23681 A-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTA 23739 | || ||||| | || | || || || ||||| | || || |||||||| ||||| Sbjct 103066 ACAACGTTAAATCGAAGA-TTCAAGATAAGGAAGGCATCCCTCCCGATCAACAACGTTTG 103008 Query 23740 ATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAA 23799 || || || ||||||||||| ||||| | ||||| | ||| ||||| || || || Sbjct 103007 ATCTTCGCTGGCAAACAACTTGAAGATGGTCGCACCCTTTCCGACTACAATATCCAGAAG 102948 Query 23800 GAGTCCACATTACATTTAGT 23819 ||||| || | || ||||| Sbjct 102947 GAGTCTACCCTTCACTTAGT 102928 Score = 87.8 bits (96), Expect = 1e-12 Identities = 133/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACA 23693 || || || || || || ||||| ||||| || | ||||| | || ||| |||| | Sbjct 103395 ACCGGCAAGACTATTACCCTCGAGGTTGAGTCTAGCGACACCATCGACAATGTTAAGTCC 103336 Query 23694 AAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAA 23753 || | | ||||| || || | || || || ||||||||||| || || ||||| || Sbjct 103335 AAGA-TCCAGGACAAGGAGGGAATTCCTCCTGACCAACAGCGTTTGATTTTCGCCGGAAA 103277 Query 23754 ACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACA 23813 |||||| ||||| | |||||||| | || || ||||| || || |||||||| | || Sbjct 103276 ACAACTCGAAGATGGTCGCACTTTGAGTGACTATAACATCCAGAAGGAGTCCACTCTCCA 103217 Query 23814 TTTAGTT 23820 | | ||| Sbjct 103216 TCTCGTT 103210 >seq32 Length=306211 Score = 84.2 bits (92), Expect = 1e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 23620 TTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTT 23679 ||||| || ||||| ||||| || || ||||| || || || || ||| | ||||| | Sbjct 242208 TTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATC 242267 Query 23680 GA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTT 23738 || ||| | || | || | | ||||| || || | || || |||||||| ||||| Sbjct 242268 GACAATGTCAAGTCCAAGA-TCCAGGACAAGGAGGGAATTCCTCCCGATCAACAACGTTT 242326 Query 23739 AATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAA 23798 || || || || || ||| |||| |||| ||| ||| | ||||||||||| ||||| Sbjct 242327 GATCTTCGCTGGAAAGCAATTGGAGGACGGACGTACTCTCTCAGATTACAACATCCAAAA 242386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338002914064484