Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20duriaeana_20[genbank_20GCA_5F002162615.1_202017-
05-31] 370 sequences; 44,096,448 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq15 129 5e-25
seq1 122 8e-23
seq12 84.2 2e-11
>seq15
Length=1659866
Score = 129 bits (142), Expect = 5e-25
Identities = 158/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586
||||||||||| | |||||||| ||||| |||||||||||| | ||||| |||
Sbjct 675677 AACACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGACCATCT 675618
Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646
||||| || ||||| ||| |||| | ||||| || ||||| || || |||||||||||
Sbjct 675617 TCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCCTTGTCC 675558
Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706
|| || || || | |||| |||||| | ||| ||||||| ||| | |||
Sbjct 675557 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTT 675498
Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742
||||| || || || || || || ||||||||| ||
Sbjct 675497 TTGCCCGTGAGGGTCTTGACGAAGATCTGCATGACT 675462
>seq1
Length=3544467
Score = 122 bits (134), Expect = 8e-23
Identities = 151/207 (73%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | ||| | |||||||||| || ||||| || || |||||||| || |
Sbjct 2378368 TACCACCACGAAGTCTGAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAC 2378427
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
||| ||||| ||| || || |||||||| ||| |||| | |||||| || |||||||
Sbjct 2378428 TCAAGGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAGATCAAACGCTGTTGGTCGGGAG 2378487
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| || ||||||||||| || || || || | |||| |||||| || ||| |
Sbjct 2378488 GAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGCTGGACTCAA 2378547
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCA 118716
|||||| ||| | || || |||||||
Sbjct 2378548 CCTCGAGGGTAATGGTCTTACCGGTCA 2378574
Score = 113 bits (124), Expect = 4e-20
Identities = 155/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | ||| | |||||||| | ||||||||||| || || || ||||||
Sbjct 2378086 TACCACCACGAAGTCTGAGGACCAAGTGAAGGGTAGACTCTTTCTGGATATTATAATCGG 2378145
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| ||||| ||| || || || ||||| ||| | || | |||||| || |||||||
Sbjct 2378146 AAAGGGTGCGACCATCTTCCAGTTGCTTTCCGGCGAAAATCAAACGCTGTTGGTCGGGAG 2378205
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| ||||| ||||||||| ||| || ||||| | |||| |||||| | ||||
Sbjct 2378206 GAATGCCTTCCTTGTCTTGAATCTTAGACTTAACGTTGTCGATGGTGTCTGAAGATTCGA 2378265
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726
|||| | ||| | || || ||||| ||||| || ||
Sbjct 2378266 CCTCAAGGGTGATGGTCTTTCCGGTAAGAGTCTTAAC 2378302
Score = 93.3 bits (102), Expect = 4e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
||||| || | || || || ||||||||||||||||| | || || |||||
Sbjct 2377878 ACCAAATGTAAAGTCGATTCCTTTTGAATGTTGTAATCCGAAAGTGTACGACCGTCCTCA 2377937
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|| || || ||||| |||| ||||| || |||||||| || || |||||||| |||
Sbjct 2377938 AGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCGGGTGGGATACCCTCCTTATCTTGG 2377997
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | |||| ||| |||| || | || ||||| | || | || ||
Sbjct 2377998 ATCTTCGACTTCACATTGTCGATGGTATCCGATGAT-TCAACCTCCAAAGTGATTGTCTT 2378056
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| || || || || |||||||||||
Sbjct 2378057 TCCGGTAAGGGTCTTGACGAAAATCTGCAT 2378086
>seq12
Length=1765576
Score = 84.2 bits (92), Expect = 2e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
||||| ||||||||||| | ||| || || || | || ||||||||| ||||
Sbjct 99194 TTTTGGATGTTGTAATCTGAGAGAGTACGTCCGTCTTCCAATTGCTTTCCAGCGAAGATC 99135
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
| ||| || ||||||||||| || ||||||||||| || || || || | |||
Sbjct 99134 AAACGTTGTTGATCGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 99075
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729
| |||||| | | ||||||||| | ||| | || ||||| || || || || || ||
Sbjct 99074 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 99016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433828443696040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |