Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20duriaeana_20[genbank_20GCA_5F002162615.1_202017- 05-31] 370 sequences; 44,096,448 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4 215 5e-51 seq7 123 2e-23 seq1 96.9 3e-15 >seq4 Length=2560074 Score = 215 bits (238), Expect = 5e-51 Identities = 603/917 (66%), Gaps = 10/917 (1%) Strand=Plus/Plus Query 23065 GTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTT 23124 |||||| || ||||| || || | |||| | || || |||| || | ||||| Sbjct 940837 GTACTCGACGATTTCCGTGCACAAATTGGAGCTGCGAATAGTACCCAGGTTCTTTTGGTT 940896 Query 23125 GCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGA 23184 ||| || ||||| | ||||||||| |||||| | || | || |||||| || | Sbjct 940897 GCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAAAGGATTTCCGGTCTCGGTTTGAGC 940956 Query 23185 CTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTT 23243 ||| | || | ||| | | ||||| | | | ||| || ||| |||| | | Sbjct 940957 CTCAAGAATGGAGTACCAAAGTTTTTGAGCCTTGATA-GTCTTGCGACCCTTGCCTGCCT 941015 Query 23244 CCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCG 23303 ||||| | ||| | || || || || | || ||| || || | || || Sbjct 941016 TTTCGTAACCCTCGTAGAGAGCCTCGAACTCCTCGCCATAAACATCTGCTAAACCTGGAC 941075 Query 23304 ATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGAT 23363 ||| | || ||||||||| |||| | | |||||||| || |||| || |||| Sbjct 941076 ATTCGTTGGGGCACATGAGAGTCCAATCTCCATTCTTTTCAACACGCTTCATGAATAGAT 941135 Query 23364 CCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCT 23423 | || ||||| | |||||||| || ||||| || || || || || ||||| || | | Sbjct 941136 CAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCACGAACTTCTTCCTTGCCA-TGAT-T 941193 Query 23424 TTTTC--AAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAA 23481 ||| | | ||| | || || || || ||||||||||| ||||| |||||||| ||||| Sbjct 941194 TTTGCGTAGATCAAGGAACTCAAAAACATCCGCATGCCATGGCTCAAGGTAAACAGCAAA 941253 Query 23482 CGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCT 23541 || || || | |||||| || || ||||| || || | ||| ||||||||| | |||| Sbjct 941254 GGCACCAGGACGCTTATTACCACCTTGATCAACATATCTGGCAGTGTTGTTGAAAACTCG 941313 Query 23542 TAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGC 23601 ||||| || |||| ||||| || || || || | | || | || Sbjct 941314 GAGCATAGGAACGATGCCGTTAGAGTTTCCATTGGTACCGGCTATGTATGCGCCAGTAGC 941373 Query 23602 TCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTG 23661 || | ||||| | || ||| || || || | || || ||||| || || Sbjct 941374 ACGGATTCGGTGAATATTGAGACCAATACCACCAGCATTCTTTGAGATCATAGCACAAAT 941433 Query 23662 TTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGA 23721 |||| ||| ||||| || || || || |||||||| || | ||| | ||| || || Sbjct 941434 CTTCAAAGTATCGTAAATACCATCAATACTGTCCTCCTTCATGTCGATAAGGAAGCATGA 941493 Query 23722 AGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTA 23781 || | ||| |||| || ||| | || ||||| ||||| || ||| || || ||||| Sbjct 941494 TGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGTGTTGGCGAGGCATGTGTGAAGTA 941553 Query 23782 TCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACC 23841 || ||||| | ||||| || |||||||| |||||||| || ||||| ||||| Sbjct 941554 CTTGTTTGACATCAAGTTGTATGTTTCGATGGCACTTTCAATGTCATCACCGTGAATACC 941613 Query 23842 GATGGCGACGCGCATCATCATGTATTGAGGTC--TCTCGACCGTGACGCCGTTAATTTTG 23899 | ||| || ||||| ||||| | ||| || | ||| | | | ||| | || Sbjct 941614 AACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACTT--TGCCATCAAGACGT 941671 Query 23900 AACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCG 23959 | || ||||| || | | || || |||||||| || | |||||| || || || ||| Sbjct 941672 AGAAGGTATGATCGCTCGAGAGTCTTGAATCCAAAGTATTGATAGTTGAAATCTCGGTCG 941731 Query 23960 TGCACTATGGCCGAATT 23976 | || ||||| ||||| Sbjct 941732 TAGACAATGGCAGAATT 941748 >seq7 Length=2023280 Score = 123 bits (136), Expect = 2e-23 Identities = 229/333 (69%), Gaps = 5/333 (2%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | ||||||||||||||||| ||||| || ||||||| ||||| | || || Sbjct 1767672 ATCTGGCAGATGTACAAAAAGGCAGAGGCATCTTTCTGGACCGCAGAAGAGATTGATTTG 1767731 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || |||||||| ||| ||| | | ||||| || ||| | | || || Sbjct 1767732 TCAAAGGATCTCCACGACTGGAACAACAGACTCAATGATGACGAGCGTTACTTCATCTCC 1767791 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || ||||||||||| || || ||||| |||||||| ||||| || || Sbjct 1767792 CACGTTCTCGCATTCTTCGCCGCATCAGACGGAATTGTCAACGAGAACTTGGTTGAGCGA 1767851 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || ||||| ||| | | ||||| ||||||| ||||| || ||| | || Sbjct 1767852 TTCAGTGGTGAAGTTCAAATCCCAGAGGCACGATGCTTCTACGGTTTCCAAATCATGATG 1767911 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA-CAACGA 57865 || ||| | || || |||| || || || |||||||| || || | ||||| ||| | Sbjct 1767912 GAGAACATTCACTCCGAAACATACTCTCTTCTCATCGACACATATATCAAGGAGCAAGCA 1767971 Query 57866 CGAGAAACGTAGACTGTTCAACGCGATCGAAAC 57898 | | | || || || ||||| || || || || Sbjct 1767972 CAAAAGACATA-CCTCTTCAATGCTATTGATAC 1768003 >seq1 Length=3544467 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| |||||||| || || || || |||||| | || || ||| | || |||| ||| Sbjct 2378304 TCGTTAAGACTCTTACCGGAAAGACCATCACCCTTGAGGTCGAATCTTCAGACACCATCG 2378245 Query 31263 A-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 | |||| | | | ||| | | ||||||||||| | || |||||||| |||||| | Sbjct 2378244 ACAACGTTAAGTCTAAGATTCAAG-ACAAGGAAGGCATTCCTCCCGACCAACAGCGTTTG 2378186 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381 || ||||| || || || ||||||| | || | ||||||||| || || ||| Sbjct 2378185 ATTTTCGCCGGAAAGCAACTGGAAGATGGTCGCACCCTTTCCGATTATAATATCCAGAAA 2378126 Query 31382 GAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || ||||| |||| || ||||| | || |||| Sbjct 2378125 GAGTCTACCCTTCACTTGGTCCTCAGACTTCGTGGTGGTA 2378086 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || || || || ||||| | || |||||| | || Sbjct 2378086 ATGCAGATTTTCGTCAAGACCCTTACCGGAAAGACAATCACTTTGGAGGTTGAATCATCG 2378027 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || || || || ||||| || | || ||||| || Sbjct 2378026 GATACCATCGACAATGTGAAGTCGAAGATCCAAGATAAGGAGGGTATCCCACCCGATCAA 2377967 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || ||||| || || | || ||| | || | ||||| ||| Sbjct 2377966 CAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGACGGTCGTACACTTTCGGATTACAAC 2377907 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| ||||||||| | ||| |||| ||| | || | || |||| Sbjct 2377906 ATTCAAAAGGAATCGACTTTACATTTGGTCCTTCGTCTCCGTGGTGGTA 2377858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764338330400