Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20duriaeana_20[genbank_20GCA_5F002162615.1_202017- 05-31] 370 sequences; 44,096,448 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq15 109 5e-19 seq1 100 2e-16 seq7 86.0 5e-12 >seq15 Length=1659866 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || ||| | || ||| |||| || ||| | | Sbjct 675466 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCC 675525 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || || || || ||||| ||| Sbjct 675526 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCCGACCAA 675585 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| || |||| | || ||| |||||||||||||||| | | | | |||||| ||| Sbjct 675586 CAGCGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGTCGCACCCTTTCCGATTACAAC 675645 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 || ||||| || ||||| |||| || |||||| Sbjct 675646 ATCCAAAAGGAGTCTACTCTTCACTTGGTGTTA 675678 >seq1 Length=3544467 Score = 100 bits (110), Expect = 2e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 || ||||| | || ||| | || ||||| | ||||||||||| | || || Sbjct 2378290 ACCGGAAAGACCATCACCCTTGAGGTCGAATCTTCAGACACCATCGACAACGTTAAGTCT 2378231 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 |||||| ||||| |||||||| |||||||| |||||| | |||||| || ||| ||| Sbjct 2378230 AAGATTCAAGACAAGGAAGGCATTCCTCCCGACCAACAGCGTTTGATTTTCGCCGGAAAG 2378171 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194 ||||| ||||||| | | | | ||||||||| || || ||||| ||||| |||| Sbjct 2378170 CAACTGGAAGATGGTCGCACCCTTTCCGATTATAATATCCAGAAAGAGTCTACCCTTCAC 2378111 Query 24195 TTAGT 24199 || || Sbjct 2378110 TTGGT 2378106 Score = 89.7 bits (98), Expect = 4e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 24009 ACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTC 24068 ||| | || || || | |||||| |||| || ||| ||| |||||||||||| | ||| Sbjct 2378578 ACAGTGACCGGTAAGACCATTACCCTCGAGGTTGAGTCCAGCGACACCATCGACAACGTC 2378519 Query 24069 AAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGC 24128 || ||||| ||||| || || || |||||||| |||||| | |||| | || | Sbjct 2378518 AAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCCGACCAACAGCGTTTGATCTTCGCC 2378459 Query 24129 GGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 || || ||||| ||||||| | | | | || || || ||||| || || || || || Sbjct 2378458 GGAAAACAACTTGAAGATGGTCGCACCTTGAGTGACTACAACATCCAGAAGGAGTCCAC 2378400 >seq7 Length=2023280 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 104589 TTTGTATTCGCCTACTCGTTTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTATT 104648 || ||| || || |||| ||||| ||||| ||||||||||| ||| |||||||| | Sbjct 1768568 TTGGTAATCACCAACTCTCTTTTCGAAAAAGTTAGTCTTGCCGGCCAAGGAAATATTCTC 1768509 Query 104649 CATAAATTCGAAAGGATTCAAAGTCTTAAAATATTTTTCGTAGCCAAGCTCGATCAACAG 104708 ||| || || || ||||| || || | ||| |||| ||| | |||| | || Sbjct 1768508 CATGAAGTCAAATGGATTGGCAGATTTGTAGACTTTGTCGTTGCCCAAAGCGATGAGGAG 1768449 Query 104709 TCGATCCGCCACAAATTCGATGTACTCGCACATAGAATGTGCA-TTCATGCCCAGCATTG 104767 ||||| || || ||||||||||||| ||| || ||| | |||||||| || | | Sbjct 1768448 ACGATCAGCAACGAATTCGATGTACTGCTTCAT-GAGGGTGGAGTTCATGCCTAGAAGAG 1768390 Query 104768 CGACGGGTAAAGCGTTAGTaaaaaaaTCTTTCTCGATGTCCACGGCTTC 104816 | || | ||| | || || || |||| |||||| | ||||| || Sbjct 1768389 CACAAGGAAGAGCCTCGGTCAAGAATTCTTGCTCGATTGCGACGGCCTC 1768341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429934061257350