Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20duriaeana_20[genbank_20GCA_5F002162615.1_202017- 05-31] 370 sequences; 44,096,448 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1 165 7e-35 seq2 105 5e-17 >seq1 Length=3544467 Score = 165 bits (182), Expect = 7e-35 Identities = 395/591 (67%), Gaps = 6/591 (1%) Strand=Plus/Plus Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053 ||| ||||| ||||| || || || || |||||| ||| | | | ||| || | | Sbjct 2295123 TATTGGTATCGATTTGGGTACTACCTACTCTTGTGTAGGTATCTTTCGTGATGATAGAAT 2295182 Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 |||||||| || || || ||||| ||| | || || ||||| | ||| | ||||| || Sbjct 2295183 CGAAATTATCGCGAACGACCAAGGAAACCGTACCACACCATCCTTCGTTGCCTTCACAGA 2295242 Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173 || || | | | | || ||||| || || |||||| | | || || | ||| || Sbjct 2295243 TACCGAGCGTCTGATCGGAGATGCTGCTAAGAATCAAGTCGCCATGAACCCAATCAACAC 2295302 Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCAGGCAG 550232 | | || ||||| || ||||| ||||| | |||||| | ||| | ||||| || | Sbjct 2295303 TGTCTTCGATGCGAAGCGTTTGATTGGTCGCAAGTTTGCA-GATGCTGAAGTTCAAGCCG 2295361 Query 550233 ATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CT 550291 |||||||||| | || ||| | | || | | | ||||| || ||||| | | Sbjct 2295362 ATATGAAGCACTTCCCATTCAAGGTCATTGACCGTGCCGGAAAGCCAGTCATTGAGGTCG 2295421 Query 550292 ACTCATGAAGGATCTGTT-AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 | | | |||| | |||||||| |||||||| |||| || || ||| | || | Sbjct 2295422 AGT--TCAAGGGAGAGAACAAACAATTCACACCAGAAGAAATCTCTTCCATGATCTTGGT 2295479 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 || |||| | | || || |||| | ||| | || | | || || | || Sbjct 2295480 CAAGATGAGAGAGACCGCTGAGGCTTACCTCGGTGGAACTGTCAACAACGCCGTCGTCAC 2295539 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 || ||||| || || | || ||||||||||||||||| || || ||||| | ||||| Sbjct 2295540 AGTCCCAGCTTACTTCACCGATTCACAACGTCAAGCTACCAAGGACGCTGGTCTCATTGC 2295599 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 ||| ||||| ||||| ||||| ||||| || ||||| || ||||| |||| || || | Sbjct 2295600 TGGTCTTAACGTTCTCCGTATCATCAACGAGCCTACCGCAGCTGCCATTGCTTACGGTTT 2295659 Query 550531 TGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 || || | | || |||| ||| || |||||||| ||| ||| || Sbjct 2295660 GGACAAGAAGATCGAGGGTGAACGTAACGTTCTCATCTTCGATCTTGGTGG 2295710 Score = 93.3 bits (102), Expect = 3e-13 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| || | || | ||| ||||| || |||||||||||| | || ||||| Sbjct 2377641 AGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCGAAAGGGTTCTG 2377700 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 || || | || ||||| ||||| || | || ||| |||||||| ||||| || || Sbjct 2377701 CCGTCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCCTCC 2377760 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 || || ||||| ||| ||| || ||||| ||||| | || | || ||| | || Sbjct 2377761 TTGTCCTGAATCTTTGATTTAACATTATCAATGGTATCTG-ACGATTCCACTTCTAATGT 2377819 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || || || ||||| | || || || || ||||||||| Sbjct 2377820 AATTGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCATA 2377859 >seq2 Length=3453044 Score = 105 bits (116), Expect = 5e-17 Identities = 117/155 (75%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 550379 GTTGGTCAAGAAGTT-ACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437 ||||| ||||||| | || | || || || ||||| ||||| || || || ||| || Sbjct 3296515 GTTGGGCAAGAAGGTCACAAAAGCCGTCATCACTGTCCCAGCTTACTTCAACGACAACCA 3296574 Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497 |||||||||||| || |||||||| || ||||| ||||| || || ||||| || || Sbjct 3296575 ACGTCAAGCTACCAAGGATGCTGGTGCAATCGCTGGTCTTAACGTCCTCCGTATCATTAA 3296634 Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532 || ||||| |||||||| |||| || || |||| Sbjct 3296635 CGAGCCTACCGCTGCTGCCATTGCTTACGGTCTTG 3296669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029276432731300