Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20duriaeana_20[genbank_20GCA_5F002162615.1_202017-
05-31] 370 sequences; 44,096,448 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq1 165 7e-35
seq2 105 5e-17
>seq1
Length=3544467
Score = 165 bits (182), Expect = 7e-35
Identities = 395/591 (67%), Gaps = 6/591 (1%)
Strand=Plus/Plus
Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053
||| ||||| ||||| || || || || |||||| ||| | | | ||| || | |
Sbjct 2295123 TATTGGTATCGATTTGGGTACTACCTACTCTTGTGTAGGTATCTTTCGTGATGATAGAAT 2295182
Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113
|||||||| || || || ||||| ||| | || || ||||| | ||| | ||||| ||
Sbjct 2295183 CGAAATTATCGCGAACGACCAAGGAAACCGTACCACACCATCCTTCGTTGCCTTCACAGA 2295242
Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173
|| || | | | | || ||||| || || |||||| | | || || | ||| ||
Sbjct 2295243 TACCGAGCGTCTGATCGGAGATGCTGCTAAGAATCAAGTCGCCATGAACCCAATCAACAC 2295302
Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCAGGCAG 550232
| | || ||||| || ||||| ||||| | |||||| | ||| | ||||| || |
Sbjct 2295303 TGTCTTCGATGCGAAGCGTTTGATTGGTCGCAAGTTTGCA-GATGCTGAAGTTCAAGCCG 2295361
Query 550233 ATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CT 550291
|||||||||| | || ||| | | || | | | ||||| || ||||| | |
Sbjct 2295362 ATATGAAGCACTTCCCATTCAAGGTCATTGACCGTGCCGGAAAGCCAGTCATTGAGGTCG 2295421
Query 550292 ACTCATGAAGGATCTGTT-AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350
| | | |||| | |||||||| |||||||| |||| || || ||| | || |
Sbjct 2295422 AGT--TCAAGGGAGAGAACAAACAATTCACACCAGAAGAAATCTCTTCCATGATCTTGGT 2295479
Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410
|| |||| | | || || |||| | ||| | || | | || || | ||
Sbjct 2295480 CAAGATGAGAGAGACCGCTGAGGCTTACCTCGGTGGAACTGTCAACAACGCCGTCGTCAC 2295539
Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470
|| ||||| || || | || ||||||||||||||||| || || ||||| | |||||
Sbjct 2295540 AGTCCCAGCTTACTTCACCGATTCACAACGTCAAGCTACCAAGGACGCTGGTCTCATTGC 2295599
Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530
||| ||||| ||||| ||||| ||||| || ||||| || ||||| |||| || || |
Sbjct 2295600 TGGTCTTAACGTTCTCCGTATCATCAACGAGCCTACCGCAGCTGCCATTGCTTACGGTTT 2295659
Query 550531 TGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581
|| || | | || |||| ||| || |||||||| ||| ||| ||
Sbjct 2295660 GGACAAGAAGATCGAGGGTGAACGTAACGTTCTCATCTTCGATCTTGGTGG 2295710
Score = 93.3 bits (102), Expect = 3e-13
Identities = 154/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316
|||||||| || | || | ||| ||||| || |||||||||||| | || |||||
Sbjct 2377641 AGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCGAAAGGGTTCTG 2377700
Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376
|| || | || ||||| ||||| || | || ||| |||||||| ||||| || ||
Sbjct 2377701 CCGTCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCCTCC 2377760
Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435
|| || ||||| ||| ||| || ||||| ||||| | || | || ||| | ||
Sbjct 2377761 TTGTCCTGAATCTTTGATTTAACATTATCAATGGTATCTG-ACGATTCCACTTCTAATGT 2377819
Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|| || || ||||| | || || || || |||||||||
Sbjct 2377820 AATTGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCATA 2377859
>seq2
Length=3453044
Score = 105 bits (116), Expect = 5e-17
Identities = 117/155 (75%), Gaps = 1/155 (1%)
Strand=Plus/Plus
Query 550379 GTTGGTCAAGAAGTT-ACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437
||||| ||||||| | || | || || || ||||| ||||| || || || ||| ||
Sbjct 3296515 GTTGGGCAAGAAGGTCACAAAAGCCGTCATCACTGTCCCAGCTTACTTCAACGACAACCA 3296574
Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497
|||||||||||| || |||||||| || ||||| ||||| || || ||||| || ||
Sbjct 3296575 ACGTCAAGCTACCAAGGATGCTGGTGCAATCGCTGGTCTTAACGTCCTCCGTATCATTAA 3296634
Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532
|| ||||| |||||||| |||| || || ||||
Sbjct 3296635 CGAGCCTACCGCTGCTGCCATTGCTTACGGTCTTG 3296669
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029276432731300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |