Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20duriaeana_20[genbank_20GCA_5F002162615.1_202017- 05-31] 370 sequences; 44,096,448 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1 176 3e-38 seq2 131 1e-24 seq12 98.7 7e-15 seq5 91.5 1e-12 seq13 86.0 5e-11 >seq1 Length=3544467 Score = 176 bits (194), Expect = 3e-38 Identities = 490/741 (66%), Gaps = 18/741 (2%) Strand=Plus/Minus Query 282146 TTATATTTTCTCTTGAAATCTTCA-ACACACCATGTT--ACAAGACGATTATCAAAATCT 282202 |||| ||| |||||||| |||| | ||| || | |||||||| || ||||| || Sbjct 2295854 TTATGTTTCCTCTTGAA---TTCAGAGACAAAGTGGTTAACAAGACGGTTGTCAAAGTCC 2295798 Query 282203 TCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGA 282262 ||||| ||||| | ||| | || | || | | || | ||| | || || || | Sbjct 2295797 TCACCACCCAAGTGAGTGTCACCAGCGGTGGACTTGACCTCGAAGATACCCTCCTCGATG 2295738 Query 282263 GACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCT 282322 | ||| |||| ||||| |||||| ||||| | ||| || || || || || ||| Sbjct 2295737 GTCAAGAGAGAGACATCGAAGGTTCCTCCACCAAGATCGAAGATGAGAACGTTACGTTCA 2295678 Query 282323 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382 || || || || | ||| || |||| ||||| || || || || || || || Sbjct 2295677 CCCTCGATCTTCTTGTCCAAACCGTAAGCAATGGCAGCTGCGGTAGGCTCGTTGATGATA 2295618 Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442 | | ||| |||||||||||||| || || || || || ||||| | |||||||||| Sbjct 2295617 CGGAGAACGTTAAGACCAGCAATGAGACCAGCGTCCTTGGTAGCTTGACGTTGTGAATCG 2295558 Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCATCTGTT-ACTTCTTTTCCAATATAAGCGCT 282501 | || || || || || || | ||||| | |||| || | || | ||||| Sbjct 2295557 GTGAAGTAAGCTGGGACTGTGACGACGGCGT-TGTTGACAGTTCCACCGAGGTAAGCCTC 2295499 Query 282502 TGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTT 282561 || || | | |||| || || ||||| || || |||| |||||| | |||| || Sbjct 2295498 AGCGGTCTCTCTCATCTTGACCAAGATCATGGAAGAGATTTCTTCTGGTGTGAATTGTTT 2295439 Query 282562 GGATTCATT---TTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTT 282618 | ||| | |||| | || |||| ||| || || | ||| || || Sbjct 2295438 G--TTCTCTCCCTTGA-ACTCGACCTCAATGACTGGCTTTCCGGCACGGTCAATGACCTT 2295382 Query 282619 AAATGGCCAATATTTCATATCTGATTGAACACTTTGG--TCATTAAAATCTCTACCAATT 282676 ||||| | | |||||||| | |||| |||| | || ||| | | |||||| Sbjct 2295381 GAATGGGAAGTGCTTCATATCGGCTTGA--ACTTCAGCATCTGCAAACTTGCGACCAATC 2295324 Query 282677 AATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCA 282736 || || || ||||| || | ||| ||| |||| || | || |||||| || || ||| Sbjct 2295323 AAACGCTTCGCATCGAAGACAGTGTTGATTGGGTTCATGGCGACTTGATTCTTAGCAGCA 2295264 Query 282737 TCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 282796 ||||| |||||| | || || ||||| || | ||| | ||||| || || || || ||| Sbjct 2295263 TCTCCGATCAGACGCTCGGTATCTGTGAAGGCAACGAAGGATGGTGTGGTACGGTTTCCT 2295204 Query 282797 TGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTT 282856 || || ||||| |||||||| | | || ||| | | | |||||||||| | || Sbjct 2295203 TGGTCGTTCGCGATAATTTCGATTCTATCATCACGAAAGATACCTACACAAGAGTAGGTA 2295144 Query 282857 GTTCCTAAATCAATACCAATA 282877 || || ||||| ||||||||| Sbjct 2295143 GTACCCAAATCGATACCAATA 2295123 Score = 98.7 bits (108), Expect = 7e-15 Identities = 244/368 (66%), Gaps = 3/368 (1%) Strand=Plus/Minus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 || || || ||||| | ||| || ||||| |||||||| || || || | | |||||| Sbjct 2296826 ATTCCGTTAGCATCAAGATCGAAGGTGACCTCAATTTGTGGAACACCACGTGGTGCAGGT 2296767 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || | | || | |||| | || || || || ||| || || ||| Sbjct 2296766 GGGATACCAGTGAGCTCGAACTTGCCCAAAAGGTTGTTGTCCTTGGTGCGTTGACGCTCA 2296707 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 |||||||| | |||||| || ||| ||| || || || | || | || || | Sbjct 2296706 CCCTCGAAGACTTGGATGAGGACACCAGGTTGGTTGTCAGAGAAGGTGGAGAAGACCTCG 2296647 Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 || || || || || || |||||||| ||| | |||||||| |||||||| Sbjct 2296646 GACTTCTTGGTTGGGATGGTGGTGTTTCTTGGAATGAGCTTGGTCATCTGTCCACCAGCA 2296587 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 281738 || || | ||| ||||| | || | |||||| | |||| || | || | | || Sbjct 2296586 GTCTCGATACCGAGAGACAATGGGGCGACATCGAGGAGGAGGATCTCGTTGGTGGACTTG 2296527 Query 281739 CA-TCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 | ||| | |||| ||||| || || || | |||||||| ||||||||||| ||| Sbjct 2296526 GAGGAAGTGTCACCAGAGAGAATGGCAGCCTGGACGGCAGCACCGTATGCAACAGCCTCA 2296467 Query 281798 TCAGGATT 281805 ||||| || Sbjct 2296466 TCAGGGTT 2296459 >seq2 Length=3453044 Score = 131 bits (144), Expect = 1e-24 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 ||||| ||||||||| || | |||||||||||||||||||||||||| | ||||| ||| Sbjct 2128669 GGTAAGGAAGGTCGTCTTCGTGGAAATTTGATGGGAAAGCGTGTCGACTTCTCTGCCCGT 2128610 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407 || || |||||| |||||| ||| | |||| |||| |||||||| |||| | |||| Sbjct 2128609 ACTGTCATTACTGGTGATCCCAATCTCTCTCTAGATGAGGTTGGTGTCCCTCGAAGTATT 2128550 Query 432408 GCGAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGATTATTTGACTCAA 432467 || | || || || | | || | ||| ||| || ||||| ||| | ||| ||| Sbjct 2128549 GCAAGAATCCTCACATATCCGGAGACTGTTACACCACTGAATATCGATAAATTGCATCAG 2128490 Query 432468 TTAGTGAAAAATGGT--AAAAGAGTATATCCAGGTGCCAATTTTGTAATC 432515 | || || |||||| | | ||| |||| ||||| || | ||| ||| Sbjct 2128489 CTTGTTAAGAATGGTCCAGATGAG--CATCCTGGTGCTAAATATGTCATC 2128442 Score = 104 bits (114), Expect = 2e-16 Identities = 208/306 (68%), Gaps = 8/306 (3%) Strand=Plus/Minus Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251 |||| ||||||| ||||||||| | || | || | ||||| | || ||| | | Sbjct 3296819 TATCGAAATCTTGACCTCCCAAATGGGTGTCACCGGCAGTAGCCTTAACAGTGAAGACAC 3296760 Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311 || ||| | | ||||| |||||| ||||||||||| | ||| | || || | Sbjct 3296759 CACCTTGGATGTTAAGAAGAGAAACATCGAAAGTTCCACCACCGAGATCGTAGATGAGAA 3296700 Query 282312 CATTCATTTCTTTGTCTTGGTTTTT-----ATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 | || ||||||| ||| ||| | ||||||| || |||| |||||||| || Sbjct 3296699 CGTTACGCTCTTTGT--TGGACTTTCCAGCACCAAGACCGTAAGCAATGGCAGCAGCGGT 3296642 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 || || ||||| || | | || ||||||||||| ||| || ||||| || || || Sbjct 3296641 AGGCTCGTTAATGATACGGAGGACGTTAAGACCAGCGATTGCACCAGCATCCTTGGTAGC 3296582 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA-CTTCTT 282485 ||| | ||| ||||| || || || || ||||| || ||||| | ||| | |||||| Sbjct 3296581 TTGACGTTGGTTGTCGTTGAAGTAAGCTGGGACAGTGATGACGGCTTTTGTGACCTTCTT 3296522 Query 282486 TTCCAA 282491 |||| Sbjct 3296521 GCCCAA 3296516 >seq12 Length=1765576 Score = 98.7 bits (108), Expect = 7e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || || | ||| || || | ||| ||||||||||| || || | || ||| | ||| || Sbjct 561518 TTCTCCAAACCGTAAGCGAGAGCGGCAGCAGTTGGCTCGTTGACAACTCTGAGAACGTTC 561459 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 | ||| |||||| || ||||| ||||| ||||| | ||| |||||||| || ||||| Sbjct 561458 AAACCGGCAATTTGACCAGCATCCTTAGTAGCTTGACGTTGGGAATCGTTGAAGTATGCG 561399 Query 282455 GGAACAGTAATAACGGCAT 282473 ||||| |||| ||||||| Sbjct 561398 GGAACGGTAACGACGGCAT 561380 >seq5 Length=2273674 Score = 91.5 bits (100), Expect = 1e-12 Identities = 192/284 (68%), Gaps = 13/284 (5%) Strand=Plus/Minus Query 282193 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 282252 ||| |||||||| |||||||| | ||| | || | |||| || | || | || Sbjct 1575942 ATCGAAATCTTCTCCTCCCAAGTGAGTGTCACCGGCAGTAGAAAGAACCTCAAAGACACC 1575883 Query 282253 ATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAA---AATAAG 282309 | |||| || | ||||| ||||||| |||||| ||||| | |||| | ||| | Sbjct 1575882 ACGATCAATGGAGAGAAGAGAAACATCAAAGGTTCCTCCACCGAGATCATAGACAATGAT 1575823 Query 282310 T--ACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 | || |||| | | |||||| || | ||| || |||| ||| || || || Sbjct 1575822 TTGACGTTCACCT-TCAGTCTTG-------TCCAAACCGTAGGCAATAGCTGCGGCGGTA 1575771 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 ||||| || | || | | ||| || | ||| ||||| | || ||||| || |||||| Sbjct 1575770 GGTTCGTTGACGATACGGAGAACGTTCAAACCGGCAATGATACCGGCATCCTTGGTGGCT 1575711 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 |||||||| ||||| || || || |||||||||| ||| || Sbjct 1575710 TGTCTTTGGTTGTCGTTGAAGTAAGCTGGAACAGTAACAACTGC 1575667 >seq13 Length=1759894 Score = 86.0 bits (94), Expect = 5e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 131165 AAAATAAAAATTGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTT 131224 || || ||| | || || || || || |||||||||||||| || | |||| ||| || Sbjct 438098 AATATCAAAGTCGTGGTTGCAACGATTGCATTTGGTATGGGCATCGACAAACAGGACGTC 438039 Query 131225 AGAGTTGTTATTCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGT 131284 || |||| |||||||| | |||||| | | ||||||||||| || |||| ||| Sbjct 438038 CGATTTGTCATTCATTATTGTCTTCCCAAAACCTTAGAAGGTTATTACCAGGAAACTGGA 437979 Query 131285 AGAGCAGGTCGTGATGG 131301 |||| ||||| ||||| Sbjct 437978 CGAGCTGGTCGAGATGG 437962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740612234563620