Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20duriaeana_20[genbank_20GCA_5F002162615.1_202017- 05-31] 370 sequences; 44,096,448 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq15 116 2e-21 seq1 111 1e-19 seq12 84.2 1e-11 >seq15 Length=1659866 Score = 116 bits (128), Expect = 2e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| |||||||| || ||||| ||||||||| ||||| ||||| ||||| || || Sbjct 675683 AGACGTAACACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGA 675624 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| ||||| || ||||| || || || ||||||||||| || || | ||||||| Sbjct 675623 CCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCC 675564 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 675563 TTGTCCTGGATCTT 675550 >seq1 Length=3544467 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||| || | ||||| ||||||||||| || ||||| ||| Sbjct 2377632 CCACCACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCGAA 2377691 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| |||| || | || || || ||||| || || || ||||| || || || Sbjct 2377692 AGGGTTCTGCCGTCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGTGGA 2377751 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCT-TCGCTCTCCA 34657 | ||||||||||| ||| |||| |||||| || ||| || ||| || | |||| Sbjct 2377752 ATGCCCTCCTTGTC-CTGAATCTTTGATTTAACATTATCAATGGTATCTGACGAT-TCCA 2377809 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || || || || || || || || ||||| || ||||| Sbjct 2377810 CTTCTAATGTAATTGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 2377858 Score = 107 bits (118), Expect = 1e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| | ||| |||||||||||||| ||||| |||||||| || Sbjct 2377869 AGACGAAGGACCAAATGTAAAGTCGATTCCTTTTGAATGTTGTAATCCGAAAGTGTACGA 2377928 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| |||||||| ||||| ||||| || | ||| ||||| || || || | |||||| Sbjct 2377929 CCGTCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCGGGTGGGATACCCTCC 2377988 Query 34609 TTGTCTGTGATCTT 34622 || ||| |||||| Sbjct 2377989 TTATCTTGGATCTT 2378002 Score = 102 bits (112), Expect = 5e-17 Identities = 100/127 (79%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TGAAAGTGTTCGCTCGTCTT 34555 ||||| ||||||||| |||||| || ||||| || || | || ||| || | |||| Sbjct 2378388 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCACTCAAGGTG--CGACCATCTT 2378445 Query 34556 CAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTG 34615 |||||||||| ||||| || || |||||||||||||| || || | |||||||||||| Sbjct 2378446 CAAGTTGTTTTCCGGCGAAGATCAAACGCTGTTGGTCGGGAGGAATTCCCTCCTTGTCCT 2378505 Query 34616 TGATCTT 34622 |||||| Sbjct 2378506 GGATCTT 2378512 Score = 86.0 bits (94), Expect = 4e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || || || ||| || || || |||||||| ||||| || || | ||||| Sbjct 2378106 ACCAAGTGAAGGGTAGACTCTTTCTGGATATTATAATCGGAAAGGGTGCGACCATCTTCC 2378165 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 ||||| || ||||| || || |||||||||||||| || || | || ||||||||| Sbjct 2378166 AGTTGCTTTCCGGCGAAAATCAAACGCTGTTGGTCGGGAGGAATGCCTTCCTTGTCTTGA 2378225 Query 34618 ATCTT 34622 ||||| Sbjct 2378226 ATCTT 2378230 >seq12 Length=1765576 Score = 84.2 bits (92), Expect = 1e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576 ||||||| ||||| |||||||| || || || ||||||| | ||| || || || || | Sbjct 99196 CCTTTTGGATGTTGTAATCTGAGAGAGTACGTCCGTCTTCCAATTGCTTTCCAGCGAAGA 99137 Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 | ||||| ||||| || || || | |||||||||||| |||||| Sbjct 99136 TCAAACGTTGTTGATCGGGAGGAATTCCCTCCTTGTCCTGGATCTT 99091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728180766210