Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20duriaeana_20[genbank_20GCA_5F002162615.1_202017-
05-31] 370 sequences; 44,096,448 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq1 190 5e-43
seq15 185 2e-41
seq12 147 5e-30
seq4 95.1 3e-14
>seq1
Length=3544467
Score = 190 bits (210), Expect = 5e-43
Identities = 168/210 (80%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
||||||||| ||||| | |||||| || |||||||| ||||| |||||||| | ||||||
Sbjct 2378093 ACGAAGTCTGAGGACCAAGTGAAGGGTAGACTCTTTCTGGATATTATAATCGGAAAGGGT 2378152
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||||||||| ||||| || ||||| || | || |||||||| ||||||| ||
Sbjct 2378153 GCGACCATCTTCCAGTTGCTTTCCGGCGAAAATCAAACGCTGTTGGTCGGGAGGAATGCC 2378212
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||| || ||||| || ||||| ||||||||||| || ||| ||||| ||
Sbjct 2378213 TTCCTTGTCTTGAATCTTAGACTTAACGTTGTCGATGGTGTCTGAAGATTCGACCTCAAG 2378272
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102
||||| |||||||| || |||||||| ||
Sbjct 2378273 GGTGATGGTCTTTCCGGTAAGAGTCTTAAC 2378302
Score = 158 bits (174), Expect = 3e-33
Identities = 156/199 (78%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951
||||||||| ||||| | ||| ||||||||||| || |||||||| || || | ||| ||
Sbjct 2378375 ACGAAGTCTGAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCACTCAA-GG 2378433
Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011
| | |||||||| || || || || |||||||| | || |||||||| ||||||| ||
Sbjct 2378434 TGCGACCATCTTCAAGTTGTTTTCCGGCGAAGATCAAACGCTGTTGGTCGGGAGGAATTC 2378493
Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071
| ||||||||||||||||| || ||||| ||||||||||| | ||||||||||
Sbjct 2378494 CCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGCTGGACTCAACCTCGA 2378553
Query 211072 GAGTGATCGTCTTTCCCGT 211090
| || || ||||| || ||
Sbjct 2378554 GGGTAATGGTCTTACCGGT 2378572
Score = 131 bits (144), Expect = 4e-25
Identities = 162/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || | ||| | ||| || ||||| || || ||||||| ||||||
Sbjct 2377637 ACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCGAAAGGGT 2377696
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
|| || || |||| |||||| ||||| ||||| | |||||||| ||||| |||| ||
Sbjct 2377697 TCTGCCGTCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCC 2377756
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||| |||||| ||| || || || ||||| || || ||| || || |
Sbjct 2377757 CTCCTTGTCCTGAATCTTTGATTTAACATTATCAATGGTATCTGACGATTCCACTTCTAA 2377816
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| || || | ||||| ||||| | |||||
Sbjct 2377817 TGTAATTGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 2377858
>seq15
Length=1659866
Score = 185 bits (204), Expect = 2e-41
Identities = 174/222 (78%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
||| || | || || | ||||||||| ||||| ||||||||||| ||||| | ||||||
Sbjct 675687 ACGGAGACGTAACACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAATCGGAAAGGGT 675628
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| |||||||| || ||||| || |||||||| | || |||||||| || |||| |||
Sbjct 675627 GCGACCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCC 675568
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||| || || || ||||||||||| || |||||||||||
Sbjct 675567 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAG 675508
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || || |||||||| ||||| || || | ||||||
Sbjct 675507 GGTGATGGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 675466
>seq12
Length=1765576
Score = 147 bits (162), Expect = 5e-30
Identities = 140/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
||||||||||| ||||| | || || | ||| ||||||| ||||| || ||||||||
Sbjct 99194 TTTTGGATGTTGTAATCTGAGAGAGTACGTCCGTCTTCCAATTGCTTTCCAGCGAAGATC 99135
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| |||||||| || ||||||| ||| ||||||||||||||||| || || || |||
Sbjct 99134 AAACGTTGTTGATCGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 99075
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|||||||| ||| || ||||| || ||||| ||||| ||||| || ||||| || ||
Sbjct 99074 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 99016
>seq4
Length=2560074
Score = 95.1 bits (104), Expect = 3e-14
Identities = 188/275 (68%), Gaps = 4/275 (1%)
Strand=Plus/Plus
Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCCAC 178152
|||||||||||||||||| || ||||| ||||| ||||| || ||||
Sbjct 940885 GTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAAAGGATTTCCGGT 940944
Query 178153 CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGC 178212
||| | ||||||| | |||||| | |||||| | || || || |||||| |
Sbjct 940945 CTCGGTTTGAGCCTCAAGAATGGAGTACCAAAGTTTTTGAGCCTTGATAGTCTTGCGACC 941004
Query 178213 TTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATC 178272
|| ||| | || ||||| | |||||| ||||||| ||| ||||| ||||| |
Sbjct 941005 CTTGCCTGCCTTTTCGTAACCCTCGTAGAGAGCCTCGAACTCCTCGCCATAAACATCTGC 941064
Query 178273 GAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACC-GTCTTCCTTC-ACTCGT 178330
| ||| ||| || |||||||| | |||| |||| | || |||| ||| || ||
Sbjct 941065 TAAACCTGGACATTCGTTGGGGCACATGAGAGTCCAATCTCCATTCTT--TTCAACACGC 941122
Query 178331 TTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365
|||||||| || |||| |||| | ||| |||||
Sbjct 941123 TTCATGAATAGATCAGGAATCCACAAGGCGTAGAA 941157
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159146504895050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |