Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20duriaeana_20[genbank_20GCA_5F002162615.1_202017-
05-31] 370 sequences; 44,096,448 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq15 118 7e-22
seq1 113 3e-20
seq12 87.8 1e-12
>seq15
Length=1659866
Score = 118 bits (130), Expect = 7e-22
Identities = 156/214 (73%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||||||||| ||||| ||||| ||||| ||||| || |
Sbjct 675466 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCC 675525
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || | | ||||| || || | || || || ||
Sbjct 675526 GACACCATCGACAATGTCAAGTCCAAGA-TCCAGGACAAGGAGGGAATTCCACCCGACCA 675584
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| || || || ||||| || ||||| ||||| | ||||| | |||||||||
Sbjct 675585 ACAGCGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGTCGCACCCTTTCCGATTACAA 675644
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823
||| ||||| ||||| || | || || || |||
Sbjct 675645 CATCCAAAAGGAGTCTACTCTTCACTTGGTGTTA 675678
>seq1
Length=3544467
Score = 113 bits (124), Expect = 3e-20
Identities = 155/212 (73%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || ||||| || ||||| || |||||| | || ||||| || ||
Sbjct 2378086 ATGCAGATTTTCGTCAAGACCCTTACCGGAAAGACAATCACTTTGGAGGTTGAATCATCG 2378027
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || | || ||| | || | || | | || || || ||| | || || |||||
Sbjct 2378026 GATACCATCGACAATGTGAAGTCGAAGA-TCCAAGATAAGGAGGGTATCCCACCCGATCA 2377968
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787
||| ||| | || ||||| || || ||||| || |||| || |||||| || |||||
Sbjct 2377967 ACAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGACGGTCGTACACTTTCGG--ATTAC 2377910
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819
||||| ||||| || || || |||||||| ||
Sbjct 2377909 AACATTCAAAAGGAATCGACTTTACATTTGGT 2377878
Score = 93.3 bits (102), Expect = 3e-14
Identities = 135/188 (72%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 23621 TCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTG 23680
||||||| || || || ||||| || ||||| || || || || || | ||||| | |
Sbjct 2378304 TCGTTAAGACTCTTACCGGAAAGACCATCACCCTTGAGGTCGAATCTTCAGACACCATCG 2378245
Query 23681 A-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTA 23739
| || |||| | || | || ||||| ||||| | || || || |||||||||||
Sbjct 2378244 ACAACGTTAAGTCTAAGA-TTCAAGACAAGGAAGGCATTCCTCCCGACCAACAGCGTTTG 2378186
Query 23740 ATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAA 23799
|| || ||||| || ||||||||||| | ||||| | |||||| || || || |||
Sbjct 2378185 ATTTTCGCCGGAAAGCAACTGGAAGATGGTCGCACCCTTTCCGATTATAATATCCAGAAA 2378126
Query 23800 GAGTCCAC 23807
||||| ||
Sbjct 2378125 GAGTCTAC 2378118
Score = 82.4 bits (90), Expect = 5e-11
Identities = 122/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAA 23694
|| || || || || || ||||| ||||| |||| ||||| | || | | ||
Sbjct 2378572 ACCGGTAAGACCATTACCCTCGAGGTTGAGTCCAGCGACACCATCGACAACGTCAAGTCC 2378513
Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754
|| || ||||| || || | || || || ||||||||||| || || ||||| |||
Sbjct 2378512 AAGATCCAGGACAAGGAGGGAATTCCTCCCGACCAACAGCGTTTGATCTTCGCCGGAAAA 2378453
Query 23755 CAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807
||||| ||||| | ||||| || | || |||||||| || || ||||||||
Sbjct 2378452 CAACTTGAAGATGGTCGCACCTTGAGTGACTACAACATCCAGAAGGAGTCCAC 2378400
>seq12
Length=1765576
Score = 87.8 bits (96), Expect = 1e-12
Identities = 129/180 (72%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 23620 TTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTT 23679
||||| || ||||| ||||| || || ||||| || || || || ||| | ||||| |
Sbjct 99016 TTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATC 99075
Query 23680 GA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTT 23738
|| ||| | || | || | | ||||| || || | || || |||||||| |||||
Sbjct 99076 GACAATGTCAAGTCCAAGA-TCCAGGACAAGGAGGGAATTCCTCCCGATCAACAACGTTT 99134
Query 23739 AATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAA 23798
|| || || || || ||| ||||||||| ||| ||| | ||||||||||| |||||
Sbjct 99135 GATCTTCGCTGGAAAGCAATTGGAAGACGGACGTACTCTCTCAGATTACAACATCCAAAA 99194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338008075787960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |