Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq35 127 2e-24
>seq35
Length=307329
Score = 127 bits (140), Expect = 2e-24
Identities = 338/511 (66%), Gaps = 4/511 (1%)
Strand=Plus/Minus
Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733
|||||||||| | ||| | |||||||| |||||||| ||||| | | || || ||||
Sbjct 74559 TTTGGTAATCACCAACTCTCTTTTCGAAGAAGTTAGTCTTGCCGGCCAAGGAAATGTTCT 74500
Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793
||||||| ||||| || || | || | | ||| || |||| || || |
Sbjct 74499 CCATGAAGTCAAATGGGTTGGCAGACTTGTAGACTTTGTCGTTACCCAAAGCGATGAGGA 74440
Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853
| ||| || || ||||| || ||||| ||| | | ||||||| || | ||||
Sbjct 74439 GACGATCAGCAACGAATTCGATGTATTGCTTCATGAGGGTGGAGTTCATGCCCAAAAGA- 74381
Query 16854 GTACC-GGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA 16912
| || |||||||| || ||||| ||| |||||| || | || || || | ||||
Sbjct 74380 GCACAAGGAAGAGCCTCGGTCAAGAATTCTTGCTCAATTGCGACGGCCTCGGTGATAACG 74321
Query 16913 -CTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAA 16971
|| | | | || || ||| || || || ||||| || | || ||||||||
Sbjct 74320 TCTTGGACGGC-TTGCTTGGATGGGCGGTGCTTGAGATGGGAGAAGAGGAGGCATGCGAA 74262
Query 16972 ATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCAT 17031
|||| || | || ||||| | | ||| |||||||| || || || | |||| |||
Sbjct 74261 ATCGGTGTGGAGACCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCGGCCAT 74202
Query 17032 CTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTC 17091
|| || ||||| | ||| || || | |||||| || || || ||||| || || ||
Sbjct 74201 AAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGATCCGGAGAAGAAGATGCCTTC 74142
Query 17092 GACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTT 17151
|||| || || |||| | |||| || | || | || || | ||||||||||
Sbjct 74141 AACGGCAGCGAATGCGACAAGACGTTGAGCAAAGGTGGAGTTCTTATCTTGAATCCATTT 74082
Query 17152 CTGCACCCACTCGGCTTTTTGCTTTATGCAA 17182
|||| ||||| || | ||| ||||||
Sbjct 74081 GACAGCCCAGTCGGCCTTCTTCTTGATGCAA 74051
Score = 87.8 bits (96), Expect = 2e-12
Identities = 192/287 (67%), Gaps = 3/287 (1%)
Strand=Plus/Minus
Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293
||||| || |||||||| || ||| |||||||||| ||||||||||| || ||
Sbjct 73948 ATATATGTGTCGATGAGAAGAGAGTATGTTTCGGAGTGAATGTTCTCCATCATGATTTGG 73889
Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353
|| ||||| |||||||| || || | || |||||||| | |||||| || | |
Sbjct 73888 AAACCGTAGAAGCATCGTGCCTCTGGGATCTGAACTTCACCACTGAATCGCTCAACCAAG 73829
Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413
|| ||||| || || ||||| |||||||| || || | | || ||||| ||
Sbjct 73828 TTCTCGTTGACAATTCCGTCTGATGCGGCGAAGAATGCGAGAACGTGGGAGATGAAGTAA 73769
Query 17414 TTTTCGTCCGGTGTAAG---AACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCT 17470
||||| | || | |||||| | | ||| || || | ||| | |||
Sbjct 73768 CGCTCGTCATCATTGAGTCTGTTGTTCCAGTCGTGGAGATCCTTTGACAAATCAATCTCT 73709
Query 17471 TCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517
|| | |||||| ||| ||| |||| ||||| ||||| | ||| ||
Sbjct 73708 TCTGCGGTCCAGAAAGATGCCTCTGCTTTTTTGTACATCTGCCAGAT 73662
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517542844069680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |