Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq38 221 1e-52 seq35 145 9e-30 >seq38 Length=269250 Score = 221 bits (244), Expect = 1e-52 Identities = 1303/2064 (63%), Gaps = 47/2064 (2%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||||||||| || || || || | | ||||||| |||||||||||| || || | | Sbjct 57127 GTGAATTGAATAGGTGCTGAGGCAGCCATAGTACGTAAATAGTACATTCCGGTCTTCAAA 57068 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || | |||| || ||||||||| ||| | ||| | ||||| || Sbjct 57067 CCCAATTTCCAACCAGCAAAATGCATGGATGTAATCTTGCCCATTGTAGGATCCTTCATG 57008 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 || || ||||| |||||| |||||| ||||| || || | || |||||||||| | Sbjct 57007 TGAATGTTCATTGATTGAGATTGATCAATGAATGCACCACGATCAGCAGCCATTTGAACA 56948 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047 || || ||| | |||||||||| ||| || |||| ||| || || |||||| Sbjct 56947 ATTGTTCGTTGGGAGATTTCCCAAACAGTCTTGTAAAGAGCCTTGATGTCAGCTGGAATA 56888 Query 53048 TTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104 || | |||| ||||| ||||||||||| | || || | ||||| || | ||| | Sbjct 56887 TTGGGGATATTTTGAATGGATCCACCATCAGCAATGATACGGTTCTTCATATTGTCAGAC 56828 Query 53105 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 53164 || | | ||| | | | || || |||||||| ||||| |||||||| Sbjct 56827 CAGAGACCCATATCGACAAGGTCCTTGAGAAGCCATGGATTAACGACTTGGAATTCTCCG 56768 Query 53165 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 53224 | | || | |||| ||| || || || || ||||| | | | || || || Sbjct 56767 GCAAGAACACGACGAGAGTAGATGTTTGAAGTGTAAGGTTCGAAACATTCGTTGAAGCCA 56708 Query 53225 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 53284 | |||||| | || ||||| ||||||||||| || | | | || | | ||| Sbjct 56707 AGAATTTGGGATGTGCTAGCAGTAGGCATAGGTGCAACTAGGAGAGAGTTGCGGATTCCG 56648 Query 53285 TATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNN 53344 | | |||| | || | || ||||||| ||| | ||| | ||| ||| Sbjct 56647 TGTTGCTTGATGGATTGCTTCAAAGAGTCCCAATCCCACAAATCAGTAGGTGTAACCCCC 56588 Query 53345 NNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGT 53404 ||| || ||| ||| | | || ||| ||| || |||||||| Sbjct 56587 CACATATCGTATTGAAGTTCACCCTTAGAGACTGGGGAGCCTTGATAGGTTTCGTATGGG 56528 Query 53405 CC---TTCCTTCTC-AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 53460 || |||||| | | || | | || | | || ||| ||| || ||||| || Sbjct 56527 CCAAGTTCCTTTGCGATCTCG-ACGGAAGAGGTC---AAGGCAGCGTGGTAGATGGTCTC 56472 Query 53461 GAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG--A 53518 ||| || | | || || | || ||||| | ||||||||| | ||||| | Sbjct 56471 GAAAATTTGTATGTTGAGGTGTTTGGCTTCTGGAGAGTCAAATGGA-AGACGAAGAGCCA 56413 Query 53519 ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 53578 | ||| || || || | ||||||||||||| | ||||||||| ||| | ||| | Sbjct 56412 AGAAA-GCATCAGCAAGACCTTGAACACCAACAGCGATAGGTCGATGACGGAAATT-GCT 56355 Query 53579 ATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGAC 53637 |||| || |||| | ||||| || || || || ||||| ||||| | |||||| || Sbjct 56354 TTTTCGGGCCTCTGCGACTGGATAGTAGTTGATGTCAATAATCTTATTCAAGTTTCTAAC 56295 Query 53638 AATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATC-----TATT-AC 53691 || |||| ||| || || | || || | |||||| | ||| || | || || Sbjct 56294 AACAACTTGGACAACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCATTCATGTTGAC 56235 Query 53692 -AAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 53750 ||| || | || || || || |||| ||||| || ||||||| | | | | Sbjct 56234 GAAAGTTGGT-AAAGCGATGGAAGCCAAGTTACAGCAAGCAACCTCATCTGGTGCAGAGT 56176 Query 53751 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 53810 | | | || || ||||| | ||| | || || || | || | ||| || | Sbjct 56175 ACTCAACGATTTCTGTGCACAAATTGGAGCTGCGAATAGTACCCAGGTTCTTTTGGTTGC 56116 Query 53811 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATT 53870 |||| ||||| || |||||||| ||||| ||||| || | || || || | || | | Sbjct 56115 TCTTCTTGTTGCATGCATCCTTGTAAAGCATGAAGGGATTTCCGGTCTCGGTTTGAGCCT 56056 Query 53871 CTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT---TTCTC 53927 | | ||| | | ||| | |||||| | |||| ||| | ||| | | Sbjct 56055 CAAGAATGGAGTACCAAAGTTTTTGAGCCT---TGATAGTCTTGCGACCCTTGCCTGCCT 55999 Query 53928 TTTCGTA--TAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGG 53985 ||||||| ||| | | | || ||||| || || |||||| | || || || Sbjct 55998 TTTCGTAACCCTCGTAGAGAGCC--TCGAACTCCTCGCCATAAACATCTGCTAAACCTGG 55941 Query 53986 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 54045 |||||| | || ||||| | | ||| || || | | | || || ||||| || || Sbjct 55940 ACATTCGTTGGGGCACATGAGAGTCCAATCCCCATTCTTTTCAACACGCTTCATGAATAG 55881 Query 54046 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 54105 |||||||||||| | || || ||||| | | | | ||| || || || ||| Sbjct 55880 ATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCACGAACTTCTTCTTTGCCATGATT 55821 Query 54106 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCAT 54165 || ||||| |||||| | | || ||| | |||||| || || | ||| | | | Sbjct 55820 TTTGCGTAGATCAAGGAACTCAAAAACATCCGCATGCCATGGCTCAAGGTAAACAGCAAA 55761 Query 54166 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 54225 | ||||| || || || || || ||||| | ||||| || ||||| || |||||| Sbjct 55760 GGCACCAGGACGCTTATTACCACCTTGATCAACATATCTGGCAGTGTTGTTGAAAACTCG 55701 Query 54226 CAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGC 54285 | ||| |||| ||||| || || || ||||| |||| || || ||| | || Sbjct 55700 GAGCATAGGAACGATACCGTTAGAGTTTCCGTTGGTACCGGCAATGTATGCGCCAGTAGC 55641 Query 54286 ACGAATATTACTAATTGAT-AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATC 54344 ||| || | | | || | ||||| || || || || | || ||||| | || || Sbjct 55640 ACGGAT-TCGGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATAGCACAAA 55582 Query 54345 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 54404 || || ||||| || || || || ||||| || ||| |||||| | || || || Sbjct 55581 TCTTCAAAGTATCGTAAATACCATCAATACTGTCCTCCTTCATGTCGATAAGGAAGCATG 55522 Query 54405 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 54464 || | ||| | ||| |||||| || | || || || || || || || Sbjct 55521 ATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGTGTTGGCGAGGCATGTGTGAAGT 55462 Query 54465 ATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATT 54523 | || | || | | ||||| || |||||||| || ||||| || | ||||| Sbjct 55461 ACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCAATATCATCACCG-TGAATA 55403 Query 54524 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 54583 || || || |||||||| | ||| || || || | ||| | | ||| | | Sbjct 55402 CCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACTTTGCCATCAAGACGT 55343 Query 54584 AGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTT 54641 || | ||| || || | |||||| || ||||| || | || ||||| ||||| | Sbjct 55342 AGAAGGTATGAACGCTCGAGAGTTTTGAATCCAAAGTATTGATAGTTGAAA--TCTCGGT 55285 Query 54642 CGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACA-TCCATGGTAATA 54700 |||| | ||| | || ||||||| |||| || | | |||| ||| || | || | Sbjct 55284 CGTAGACAATGGCAGAATTGAGTTCCTCCTCATGTCTCATAAC-ACATTCGAAAGT-TTC 55227 Query 54701 CTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTT 54759 |||| ||| || ||||| | | |||||| | || || ||| | ||||||| Sbjct 55226 CTTGCTAATCATAGGAGATGCTGTGCCATTTCTGGGGTTTGTATACTGGTATAAATCGCG 55167 Query 54760 CATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGC 54819 || || | || |||| || |||| |||||| || || || || || || | ||| Sbjct 55166 AATAACGTGCGAGAACTGTTTCTTGGTTTGTTTGTGGAGGTTGGAGACTGCAATACGAGC 55107 Query 54820 GGCTAGAATGGCATAATCCGGATG 54843 ||||||||||||||||| ||||| Sbjct 55106 AGCTAGAATGGCATAATCGGGATG 55083 >seq35 Length=307329 Score = 145 bits (160), Expect = 9e-30 Identities = 571/904 (63%), Gaps = 67/904 (7%) Strand=Plus/Minus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 |||||||| ||||| || | |||||||| || ||||| || || | || || || || Sbjct 74560 TTTTGGTAATCACCAACTCTCTTTTCGAAGAAGTTAGTCTTGCCGGCCAAGGAAATGTTC 74501 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATC 23963 |||||||| || |||| |||| | || |||| | | | ||||| | | Sbjct 74500 TCCATGAAGTCAAATGGGTTGGCAGACTTGTAGACTTTGTCGTTACCCAAAGCGATGAGG 74441 Query 23964 AATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 24023 | | ||| || || || || || ||| ||||| | | ||||| || | ||| Sbjct 74440 AGACGATCAGCAACGAATTCGATGTATTGCTTCATGAGGGTGGAGTTCATGCCCAAAAGA 74381 Query 24024 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 24083 | ||||||||| | || | |||||||| ||||| | ||| || || || |||| Sbjct 74380 GCACAAGGAAGAGCCTCGGTCAAGAATTCTTGCTCAATTGCGACGGCCTCGGTGATAACG 74321 Query 24084 GATCTT--ACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 24140 |||| || | || ||| | || || | | | ||| || | | |||||| Sbjct 74320 --TCTTGGACGGCTTGCTTGGATGGGCGG-TGCTTGAGATGGGAGAAGAGGAGGCATGCG 74264 Query 24141 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 24200 |||||| ||| ||||| ||||| | || | ||||||||| || |||||||||| | Sbjct 74263 AAATCGGTGTGGAGACCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCGGCC 74204 Query 24201 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 24260 || || |||||||| || ||||| || || || || || ||||| || ||||| || ||| Sbjct 74203 ATAAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGATCCGGAGAAGAAGATGCCT 74144 Query 24261 TCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG---CTGTCATGTATCCAC 24317 || || || || || || | ||| | || || | || | | || || ||||| Sbjct 74143 TCAACGGCAGCGAATGCGACAAGACGTTGAGCAAAGGTGGAGTTCTTATCTTGAATCCAT 74084 Query 24318 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA----------------------- 24354 || |||||| ||||||||||| || | ||||| | Sbjct 74083 TTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGGAACTATCAAGGTTGTTAGTTGAATT 74024 Query 24355 ----------------------------TTGTCTCTATAGCATTAAAGAGATA-Gt-ttt 24384 | || || |||||||| ||||| || || ||| Sbjct 74023 CATGTAACAATGTATGATTGTAACCTACTGGTATCAATAGCATTGAAGAGGTATGTCTTT 73964 Query 24385 tttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 24444 | | || | || || | |||||| || || | |||| || |||| || ||||||| Sbjct 73963 TGTGCTTGC--TCCTTGATATATGTGTCGATGAGAAGAGAGTATGTTTCGGAGTGAATGT 73906 Query 24445 TTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATAC 24504 | || || ||||| || |||||||| |||| ||||| | ||||| ||||| || Sbjct 73905 TCTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCCTCTGGGATCTGAACTTCACCAC 73846 Query 24505 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 24564 ||||| || | || || || || || |||||||| || || || || || | | Sbjct 73845 TGAATCGCTCAACCAAGTTCTCGTTGACAATTCCGTCTGATGCGGCGAAGAATGCGAGAA 73786 Query 24565 CATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTATTCCAATCATTGATATCTT 24621 | || || || || ||||| | ||| || ||||| || | || ||| | Sbjct 73785 CGTGGGAGATGAAGTAACGCTCGTCATCATTGAGTCTGTTGTTCCAGTCGTGGAGATCCT 73726 Query 24622 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 24681 | || | ||| | ||||| | ||||| || ||||||||||| ||||| ||||| | || Sbjct 73725 TTGACAAATCAATCTCTTCTGCGGTCCAGAAAGATGCCTCTGCTTTTTTGTACATCTGCC 73666 Query 24682 AGAT 24685 |||| Sbjct 73665 AGAT 73662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718438432480