Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq35 140 3e-28 seq18 122 9e-23 seq3 93.3 4e-14 seq17 87.8 2e-12 >seq35 Length=307329 Score = 140 bits (154), Expect = 3e-28 Identities = 204/285 (72%), Gaps = 5/285 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| ||||||||||| || ||||| || |||||||||| || ||| | || || Sbjct 73662 ATCTGGCAGATGTACAAAAAAGCAGAGGCATCTTTCTGGACCGCAGAAGAGATTGATTTG 73721 Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAA 116751 || ||||| | | | ||||||| | | | || || ||||||| | |||||| Sbjct 73722 TCAAAGGATCTCCA-CGACTGGAACAACAGACTCAATGATGACGAGCGTTACTTCATCTC 73780 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||||| || || || |||||||| ||||| || ||||||||||| |||| ||||| Sbjct 73781 CCACGTTCTCGCATTCTTCGCCGCATCAGACGGAATTGTCAACGAGAACTTGGTTGAGCG 73840 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| | || || ||| | | ||||| || ||||||||||| || || ||| || Sbjct 73841 ATTCAGTGGTGAAGTTCAGATCCCAGAGGCACGATGCTTCTACGGTTTCCAAATCATGAT 73900 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 ||||||| | ||||| |||| || || ||||||||||| || Sbjct 73901 GGAGAACATTCACTCCGAAACATACTCTCTTCTCATCGACACATA 73945 Score = 114 bits (126), Expect = 1e-20 Identities = 268/399 (67%), Gaps = 4/399 (1%) Strand=Plus/Plus Query 117038 CGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATA 117097 || || || || ||||| ||||| || ||| ||||||| || || |||||| | || Sbjct 74118 CGTCTTGTCGCATTCGCTGCCGTTGAAGGCATCTTCTTCTCCGGATCCTTCGCCTCTATC 74177 Query 117098 TTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCC 117157 || ||||||||||| || || || ||| |||| || || ||| |||||| ||||||||| Sbjct 74178 TTCTGGCTCAAGAAGCGTGGTCTTATGGCCGGACTCACCTTCTCCAACGAACTCATCTCC 74237 Query 117158 AGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGA 117217 | ||||| ||||| || ||| || || || | || ||| ||| | ||| || Sbjct 74238 CGTGACGAAGGTCTCCACACCGATTTCGCATGCCTCCTCTTCTCCCATCTCAAGCACCG- 74296 Query 117218 CCGAGCGCGGCGCG-CGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTT 117276 || | | || | |||| || | ||||||| || ||||| || ||||| || Sbjct 74297 CCCATCCAAGCAAGCCGTCCAAGACGTTATCACCGAGGCCGTCGCAATTGAGCAAGAATT 74356 Query 117277 CCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAAT 117335 | | ||||| || || || |||| ||| |||| | || | | ||| ||||| Sbjct 74357 CTTGACCGAGGCTCTTCCTTGTGC-TCTTTTGGGCATGAACTCCACCCTCATGAAGCAAT 74415 Query 117336 ACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACA 117395 ||||||| ||||| || || | || || ||| ||| || ||| |||||| Sbjct 74416 ACATCGAATTCGTTGCTGATCGTCTCCTCATCGCTTTGGGTAACGACAAAGTCTACAAGT 74475 Query 117396 CGCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434 | ||||||| | ||||| ||| | ||| ||||||| Sbjct 74476 CTGCCAACCCATTTGACTTCATGGAGAACATTTCCTTGG 74514 >seq18 Length=865119 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||||||||||||| |||| || || | || Sbjct 543247 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCC 543306 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| ||||| || || | ||||| Sbjct 543307 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCCGACCAA 543366 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | |||| ||| || || || || || || | |||||||| ||| |||||| Sbjct 543367 CAGCGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTTTCCGATTACAAC 543426 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| |||||| |||| || || | ||||| || Sbjct 543427 ATCCAAAAGGAGTCCACTCTTCACTTGGTGTTACG 543461 >seq3 Length=2676204 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755 ||| |||| || || || || || || ||||||||| | || |||||| | | |||| | Sbjct 1950227 ATAGTCGTTAAGACTCTTACCGGAAAGACCATCACCCTTGAGGTCGAATCTTCAGACACC 1950168 Query 40756 GTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACG 40814 | | |||| | ||| || |||| ||||| || ||||| || | ||||| ||||| Sbjct 1950167 ATCGACAACGTT-AAGTCTAAGATTCAAGACAAGGAAGGCATTCCTCCCGACCAACAACG 1950109 Query 40815 ACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 40874 | || | ||| || || || ||||| |||| |||||||| ||| || || ||||| Sbjct 1950108 TTTGATTTTCGCTGGAAAGCAACTGGAAGACGGTCGCACCCTTTCCGATTATAATATCCA 1950049 Query 40875 GAAGGAGGCCACGCTGCA 40892 ||||||| | || || || Sbjct 1950048 GAAGGAGTCTACCCTTCA 1950031 >seq17 Length=875485 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| | || ||||| || |||||| | | Sbjct 658065 TTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATC 658124 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| ||||| || || | || || ||||| | Sbjct 658125 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCCGATCAACAACGTTTG 658184 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || || || |||| |||| || || ||| || ||||||||||| ||| Sbjct 658185 ATCTTCGCTGGAAAGCAATTGGAAGACGGACGTACTCTCTCAGATTACAACATCCAAAAG 658244 Query 40879 G 40879 | Sbjct 658245 G 658245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216456457760