Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq35 140 3e-28
seq18 122 9e-23
seq3 93.3 4e-14
seq17 87.8 2e-12
>seq35
Length=307329
Score = 140 bits (154), Expect = 3e-28
Identities = 204/285 (72%), Gaps = 5/285 (2%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| ||||||||||| || ||||| || |||||||||| || ||| | || ||
Sbjct 73662 ATCTGGCAGATGTACAAAAAAGCAGAGGCATCTTTCTGGACCGCAGAAGAGATTGATTTG 73721
Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAA 116751
|| ||||| | | | ||||||| | | | || || ||||||| | ||||||
Sbjct 73722 TCAAAGGATCTCCA-CGACTGGAACAACAGACTCAATGATGACGAGCGTTACTTCATCTC 73780
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||||| || || || |||||||| ||||| || ||||||||||| |||| |||||
Sbjct 73781 CCACGTTCTCGCATTCTTCGCCGCATCAGACGGAATTGTCAACGAGAACTTGGTTGAGCG 73840
Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| | || || ||| | | ||||| || ||||||||||| || || ||| ||
Sbjct 73841 ATTCAGTGGTGAAGTTCAGATCCCAGAGGCACGATGCTTCTACGGTTTCCAAATCATGAT 73900
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916
||||||| | ||||| |||| || || ||||||||||| ||
Sbjct 73901 GGAGAACATTCACTCCGAAACATACTCTCTTCTCATCGACACATA 73945
Score = 114 bits (126), Expect = 1e-20
Identities = 268/399 (67%), Gaps = 4/399 (1%)
Strand=Plus/Plus
Query 117038 CGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATA 117097
|| || || || ||||| ||||| || ||| ||||||| || || |||||| | ||
Sbjct 74118 CGTCTTGTCGCATTCGCTGCCGTTGAAGGCATCTTCTTCTCCGGATCCTTCGCCTCTATC 74177
Query 117098 TTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCC 117157
|| ||||||||||| || || || ||| |||| || || ||| |||||| |||||||||
Sbjct 74178 TTCTGGCTCAAGAAGCGTGGTCTTATGGCCGGACTCACCTTCTCCAACGAACTCATCTCC 74237
Query 117158 AGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGA 117217
| ||||| ||||| || ||| || || || | || ||| ||| | ||| ||
Sbjct 74238 CGTGACGAAGGTCTCCACACCGATTTCGCATGCCTCCTCTTCTCCCATCTCAAGCACCG- 74296
Query 117218 CCGAGCGCGGCGCG-CGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTT 117276
|| | | || | |||| || | ||||||| || ||||| || ||||| ||
Sbjct 74297 CCCATCCAAGCAAGCCGTCCAAGACGTTATCACCGAGGCCGTCGCAATTGAGCAAGAATT 74356
Query 117277 CCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAAT 117335
| | ||||| || || || |||| ||| |||| | || | | ||| |||||
Sbjct 74357 CTTGACCGAGGCTCTTCCTTGTGC-TCTTTTGGGCATGAACTCCACCCTCATGAAGCAAT 74415
Query 117336 ACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACA 117395
||||||| ||||| || || | || || ||| ||| || ||| ||||||
Sbjct 74416 ACATCGAATTCGTTGCTGATCGTCTCCTCATCGCTTTGGGTAACGACAAAGTCTACAAGT 74475
Query 117396 CGCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434
| ||||||| | ||||| ||| | ||| |||||||
Sbjct 74476 CTGCCAACCCATTTGACTTCATGGAGAACATTTCCTTGG 74514
>seq18
Length=865119
Score = 122 bits (134), Expect = 9e-23
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||||||||||||||||||| |||| || || | ||
Sbjct 543247 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCC 543306
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || || | ||||| ||||| || || | |||||
Sbjct 543307 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCCGACCAA 543366
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| ||| | |||| ||| || || || || || || | |||||||| ||| ||||||
Sbjct 543367 CAGCGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTTTCCGATTACAAC 543426
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||| |||||| |||| || || | ||||| ||
Sbjct 543427 ATCCAAAAGGAGTCCACTCTTCACTTGGTGTTACG 543461
>seq3
Length=2676204
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755
||| |||| || || || || || || ||||||||| | || |||||| | | |||| |
Sbjct 1950227 ATAGTCGTTAAGACTCTTACCGGAAAGACCATCACCCTTGAGGTCGAATCTTCAGACACC 1950168
Query 40756 GTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACG 40814
| | |||| | ||| || |||| ||||| || ||||| || | ||||| |||||
Sbjct 1950167 ATCGACAACGTT-AAGTCTAAGATTCAAGACAAGGAAGGCATTCCTCCCGACCAACAACG 1950109
Query 40815 ACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 40874
| || | ||| || || || ||||| |||| |||||||| ||| || || |||||
Sbjct 1950108 TTTGATTTTCGCTGGAAAGCAACTGGAAGACGGTCGCACCCTTTCCGATTATAATATCCA 1950049
Query 40875 GAAGGAGGCCACGCTGCA 40892
||||||| | || || ||
Sbjct 1950048 GAAGGAGTCTACCCTTCA 1950031
>seq17
Length=875485
Score = 87.8 bits (96), Expect = 2e-12
Identities = 128/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || |||||||| ||||||||| | || ||||| || |||||| | |
Sbjct 658065 TTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATC 658124
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| ||||| || || | || || ||||| |
Sbjct 658125 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCCGATCAACAACGTTTG 658184
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| || || || |||| |||| || || ||| || ||||||||||| |||
Sbjct 658185 ATCTTCGCTGGAAAGCAATTGGAAGACGGACGTACTCTCTCAGATTACAACATCCAAAAG 658244
Query 40879 G 40879
|
Sbjct 658245 G 658245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515216456457760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |