Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3 127 3e-24 seq6 105 1e-17 >seq3 Length=2676204 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| | || ||||| || || || ||||| | ||| | Sbjct 1949777 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACCATTACATTAGAGGTGGAATCGTCA 1949718 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| |||| ||||| || ||||| || || || || || |||||||||||| Sbjct 1949717 GATACCATTGATAATGTAAAATCAAAGATTCAGGACAAGGAGGGCATTCCACCTGATCAA 1949658 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||||||||| ||||| ||||| | |||| | ||||| ||| Sbjct 1949657 CAACGATTGATCTTTGCAGGAAAGCAATTGGAGGACGGCAGAACCCTTTCGGATTACAAT 1949598 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||||| ||| || ||||| ||||| | ||| | || |||||| Sbjct 1949597 ATTCAAAAGGAAAGCACCTTGCACTTGGTGCTCCGTCTTCGTGGTGGT 1949550 >seq6 Length=2097206 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 205560 TACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGG 205619 ||| | ||||||| |||| ||||||||||||| |||| | | |||| | Sbjct 1476580 TACGTAAAATTGTGCAAACATGTGACAAGGTGGTAATGCCATTAACTTGATATCTGCAAC 1476639 Query 205620 ATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAAT 205679 |||||| || ||| || || | ||| || ||||| |||| ||| || ||| Sbjct 1476640 ATTCCATGCGCTTAGGATAATTCTCCTATCCCATGGGTTATTCTTTAATTTCCATACAAT 1476699 Query 205680 ATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGC 205739 | | || |||||||| || || ||| |||| ||| || |||||| ||||| || Sbjct 1476700 TTCCGCTAGTTGATCAACACCCTGTCCTGTGTAATCTGTCTCGGCATCAATGTATTTGGC 1476759 Query 205740 ACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTC 205787 ||| ||||| ||||||||||| ||||| || ||||||||||| ||||| Sbjct 1476760 ACCGAAATGTCGCCATTGAAACCCATACACAGGACCTAAATCTCCTTC 1476807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755451977196800