Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq18 120 3e-22
seq3 120 3e-22
>seq18
Length=865119
Score = 120 bits (132), Expect = 3e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||| |||||||| || | ||| ||||||||| || |||||||| | || || || |
Sbjct 543462 ACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGGCC 543403
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
|| || || ||||| || ||||| || | |||||| ||||||| || | | ||||||
Sbjct 543402 ATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCCTT 543343
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
|||| ||| || |||| | | | |||||| || || || |||| |||||
Sbjct 543342 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGAT 543283
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||||||||||| || ||||| || ||||| |||||
Sbjct 543282 GGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 543247
>seq3
Length=2676204
Score = 120 bits (132), Expect = 3e-22
Identities = 169/235 (72%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 42950 CTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 43009
|||||| || || | | ||| | |||||| ||||| ||||| |||||||||||||||||
Sbjct 1949544 CTATTGACCACCACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTA 1949603
Query 43010 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069
||| | || || | |||| || | ||||| || || || || | ||| || || ||
Sbjct 1949604 ATCCGAAAGGGTTCTGCCGTCCTCCAATTGCTTTCCTGCAAAGATCAATCGTTGTTGATC 1949663
Query 43070 GGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCG 43128
| || | || |||||||||| ||| | |||| ||| | | | | || || ||
Sbjct 1949664 AGGTGGAATGCCCTCCTTGTCC-TGAATCTTTGATTTTACATTATCAATGGTATCTGACG 1949722
Query 43129 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||||||| || | || ||||| ||||| || | ||||| ||||||||||||||
Sbjct 1949723 ATTCCACCTCTAATGTAATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1949777
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571814555071280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |