Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq38 237 1e-57 seq35 114 1e-20 seq3 96.9 3e-15 >seq38 Length=269250 Score = 237 bits (262), Expect = 1e-57 Identities = 611/919 (66%), Gaps = 14/919 (2%) Strand=Plus/Minus Query 23065 GTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTT 23124 |||||| || ||||| || || | |||| | || || |||| || | ||||| Sbjct 56177 GTACTCAACGATTTCTGTGCACAAATTGGAGCTGCGAATAGTACCCAGGTTCTTTTGGTT 56118 Query 23125 GCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGA 23184 ||| || ||||| | ||||||||| |||||| | || | || |||||| || | Sbjct 56117 GCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAAGGGATTTCCGGTCTCGGTTTGAGC 56058 Query 23185 CTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTT 23243 ||| | || | ||| | | ||||| | | | ||| || ||| |||| | | Sbjct 56057 CTCAAGAATGGAGTACCAAAGTTTTTGAGCCTTGATA-GTCTTGCGACCCTTGCCTGCCT 55999 Query 23244 CCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCG 23303 ||||| | ||| | || || || || | || ||| || || | || || Sbjct 55998 TTTCGTAACCCTCGTAGAGAGCCTCGAACTCCTCGCCATAAACATCTGCTAAACCTGGAC 55939 Query 23304 ATTGCATCGGACACATGAGACTCCACATTG--AGTCATTTTCAACGCGTCTCATAAAAAG 23361 ||| | || ||||||||| |||| || | || |||||||| || |||| || || Sbjct 55938 ATTCGTTGGGGCACATGAGAGTCCA-ATCCCCATTC-TTTTCAACACGCTTCATGAATAG 55881 Query 23362 ATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTT 23421 ||| || ||||| | |||||||| || ||||| || || || || |||||||| || | Sbjct 55880 ATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCACGAACTTCTTCTTTGCCA-TGAT 55822 Query 23422 CTTTTTC--AAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCA 23479 |||| | | ||| | || || || || ||||||||||| ||||| |||||||| ||| Sbjct 55821 -TTTTGCGTAGATCAAGGAACTCAAAAACATCCGCATGCCATGGCTCAAGGTAAACAGCA 55763 Query 23480 AACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACT 23539 || || || || | |||||| || || ||||| || || | ||| ||||||||| | ||| Sbjct 55762 AAGGCACCAGGACGCTTATTACCACCTTGATCAACATATCTGGCAGTGTTGTTGAAAACT 55703 Query 23540 CTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTT 23599 | ||||| || |||| |||||| || ||| || || | | || | Sbjct 55702 CGGAGCATAGGAACGATACCGTTAGAGTTTCCGTTGGTACCGGCAATGTATGCGCCAGTA 55643 Query 23600 GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCAT 23659 || || | ||||| || || ||| || || ||| | || || ||||| || || Sbjct 55642 GCACGGATTCGGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATAGCACAA 55583 Query 23660 TGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACAC 23719 |||| ||| ||||| || || || || |||||||| || | ||| | ||| || Sbjct 55582 ATCTTCAAAGTATCGTAAATACCATCAATACTGTCCTCCTTCATGTCGATAAGGAAGCAT 55523 Query 23720 GAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAG 23779 || || | ||| |||| || ||| | || ||||| ||||| || ||| || || ||| Sbjct 55522 GATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGTGTTGGCGAGGCATGTGTGAAG 55463 Query 23780 TATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATA 23839 || || ||||| | ||||| || ||||| || ||||| || || ||||| ||| Sbjct 55462 TACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCAATATCATCACCGTGAATA 55403 Query 23840 CCGATGGCGACGCGCATCATCATGTATTGAGGTC--TCTCGACCGTGACGCCGTTAATTT 23897 || | ||| || ||||| ||||| | ||| || | ||| | | | ||| | || Sbjct 55402 CCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACTT--TGCCATCAAGAC 55345 Query 23898 TGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGAT 23957 | || |||||||| | | ||||| |||||||| || | |||||| || || || | Sbjct 55344 GTAGAAGGTATGAACGCTCGAGAGTTTTGAATCCAAAGTATTGATAGTTGAAATCTCGGT 55285 Query 23958 CGTGCACTATGGCCGAATT 23976 ||| || ||||| ||||| Sbjct 55284 CGTAGACAATGGCAGAATT 55266 >seq35 Length=307329 Score = 114 bits (126), Expect = 1e-20 Identities = 227/333 (68%), Gaps = 5/333 (2%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | ||||||||||| ||||| ||||| || ||||||| ||||| | || || Sbjct 73662 ATCTGGCAGATGTACAAAAAAGCAGAGGCATCTTTCTGGACCGCAGAAGAGATTGATTTG 73721 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || |||||||| ||| ||| | | ||||| || ||| | | || || Sbjct 73722 TCAAAGGATCTCCACGACTGGAACAACAGACTCAATGATGACGAGCGTTACTTCATCTCC 73781 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || ||||||||||| || || ||||| |||||||| ||||| || || Sbjct 73782 CACGTTCTCGCATTCTTCGCCGCATCAGACGGAATTGTCAACGAGAACTTGGTTGAGCGA 73841 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || ||||| || | | ||||| ||||||| ||||| || ||| | || Sbjct 73842 TTCAGTGGTGAAGTTCAGATCCCAGAGGCACGATGCTTCTACGGTTTCCAAATCATGATG 73901 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA-CAACGA 57865 || ||| | || || |||| || || || |||||||| || || | ||||| ||| | Sbjct 73902 GAGAACATTCACTCCGAAACATACTCTCTTCTCATCGACACATATATCAAGGAGCAAGCA 73961 Query 57866 CGAGAAACGTAGACTGTTCAACGCGATCGAAAC 57898 | | | || || || ||||| || || || || Sbjct 73962 CAAAAGACATA-CCTCTTCAATGCTATTGATAC 73993 >seq3 Length=2676204 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| |||||||| || || || || |||||| | || || ||| | || |||| ||| Sbjct 1950223 TCGTTAAGACTCTTACCGGAAAGACCATCACCCTTGAGGTCGAATCTTCAGACACCATCG 1950164 Query 31263 A-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 | |||| | | | ||| | | ||||||||||| | || |||||||| || ||| | Sbjct 1950163 ACAACGTTAAGTCTAAGATTCAAG-ACAAGGAAGGCATTCCTCCCGACCAACAACGTTTG 1950105 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381 || |||||||| || || |||||||| | || | ||||||||| || || || Sbjct 1950104 ATTTTCGCTGGAAAGCAACTGGAAGACGGTCGCACCCTTTCCGATTATAATATCCAGAAG 1950045 Query 31382 GAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || ||||| |||| || ||||| | || |||| Sbjct 1950044 GAGTCTACCCTTCACTTGGTCCTCAGACTTCGTGGTGGTA 1950005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764026293920