Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq38 237 1e-57
seq35 114 1e-20
seq3 96.9 3e-15
>seq38
Length=269250
Score = 237 bits (262), Expect = 1e-57
Identities = 611/919 (66%), Gaps = 14/919 (2%)
Strand=Plus/Minus
Query 23065 GTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTT 23124
|||||| || ||||| || || | |||| | || || |||| || | |||||
Sbjct 56177 GTACTCAACGATTTCTGTGCACAAATTGGAGCTGCGAATAGTACCCAGGTTCTTTTGGTT 56118
Query 23125 GCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGA 23184
||| || ||||| | ||||||||| |||||| | || | || |||||| || |
Sbjct 56117 GCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAAGGGATTTCCGGTCTCGGTTTGAGC 56058
Query 23185 CTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTT 23243
||| | || | ||| | | ||||| | | | ||| || ||| |||| | |
Sbjct 56057 CTCAAGAATGGAGTACCAAAGTTTTTGAGCCTTGATA-GTCTTGCGACCCTTGCCTGCCT 55999
Query 23244 CCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCG 23303
||||| | ||| | || || || || | || ||| || || | || ||
Sbjct 55998 TTTCGTAACCCTCGTAGAGAGCCTCGAACTCCTCGCCATAAACATCTGCTAAACCTGGAC 55939
Query 23304 ATTGCATCGGACACATGAGACTCCACATTG--AGTCATTTTCAACGCGTCTCATAAAAAG 23361
||| | || ||||||||| |||| || | || |||||||| || |||| || ||
Sbjct 55938 ATTCGTTGGGGCACATGAGAGTCCA-ATCCCCATTC-TTTTCAACACGCTTCATGAATAG 55881
Query 23362 ATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTT 23421
||| || ||||| | |||||||| || ||||| || || || || |||||||| || |
Sbjct 55880 ATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCACGAACTTCTTCTTTGCCA-TGAT 55822
Query 23422 CTTTTTC--AAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCA 23479
|||| | | ||| | || || || || ||||||||||| ||||| |||||||| |||
Sbjct 55821 -TTTTGCGTAGATCAAGGAACTCAAAAACATCCGCATGCCATGGCTCAAGGTAAACAGCA 55763
Query 23480 AACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACT 23539
|| || || || | |||||| || || ||||| || || | ||| ||||||||| | |||
Sbjct 55762 AAGGCACCAGGACGCTTATTACCACCTTGATCAACATATCTGGCAGTGTTGTTGAAAACT 55703
Query 23540 CTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTT 23599
| ||||| || |||| |||||| || ||| || || | | || |
Sbjct 55702 CGGAGCATAGGAACGATACCGTTAGAGTTTCCGTTGGTACCGGCAATGTATGCGCCAGTA 55643
Query 23600 GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCAT 23659
|| || | ||||| || || ||| || || ||| | || || ||||| || ||
Sbjct 55642 GCACGGATTCGGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATAGCACAA 55583
Query 23660 TGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACAC 23719
|||| ||| ||||| || || || || |||||||| || | ||| | ||| ||
Sbjct 55582 ATCTTCAAAGTATCGTAAATACCATCAATACTGTCCTCCTTCATGTCGATAAGGAAGCAT 55523
Query 23720 GAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAG 23779
|| || | ||| |||| || ||| | || ||||| ||||| || ||| || || |||
Sbjct 55522 GATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGTGTTGGCGAGGCATGTGTGAAG 55463
Query 23780 TATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATA 23839
|| || ||||| | ||||| || ||||| || ||||| || || ||||| |||
Sbjct 55462 TACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCAATATCATCACCGTGAATA 55403
Query 23840 CCGATGGCGACGCGCATCATCATGTATTGAGGTC--TCTCGACCGTGACGCCGTTAATTT 23897
|| | ||| || ||||| ||||| | ||| || | ||| | | | ||| | ||
Sbjct 55402 CCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACTT--TGCCATCAAGAC 55345
Query 23898 TGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGAT 23957
| || |||||||| | | ||||| |||||||| || | |||||| || || || |
Sbjct 55344 GTAGAAGGTATGAACGCTCGAGAGTTTTGAATCCAAAGTATTGATAGTTGAAATCTCGGT 55285
Query 23958 CGTGCACTATGGCCGAATT 23976
||| || ||||| |||||
Sbjct 55284 CGTAGACAATGGCAGAATT 55266
>seq35
Length=307329
Score = 114 bits (126), Expect = 1e-20
Identities = 227/333 (68%), Gaps = 5/333 (2%)
Strand=Plus/Plus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | ||||||||||| ||||| ||||| || ||||||| ||||| | || ||
Sbjct 73662 ATCTGGCAGATGTACAAAAAAGCAGAGGCATCTTTCTGGACCGCAGAAGAGATTGATTTG 73721
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686
|| |||||||| ||| ||| | | ||||| || ||| | | || ||
Sbjct 73722 TCAAAGGATCTCCACGACTGGAACAACAGACTCAATGATGACGAGCGTTACTTCATCTCC 73781
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||||| | || || ||||||||||| || || ||||| |||||||| ||||| || ||
Sbjct 73782 CACGTTCTCGCATTCTTCGCCGCATCAGACGGAATTGTCAACGAGAACTTGGTTGAGCGA 73841
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806
|| ||||| || | | ||||| ||||||| ||||| || ||| | ||
Sbjct 73842 TTCAGTGGTGAAGTTCAGATCCCAGAGGCACGATGCTTCTACGGTTTCCAAATCATGATG 73901
Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA-CAACGA 57865
|| ||| | || || |||| || || || |||||||| || || | ||||| ||| |
Sbjct 73902 GAGAACATTCACTCCGAAACATACTCTCTTCTCATCGACACATATATCAAGGAGCAAGCA 73961
Query 57866 CGAGAAACGTAGACTGTTCAACGCGATCGAAAC 57898
| | | || || || ||||| || || || ||
Sbjct 73962 CAAAAGACATA-CCTCTTCAATGCTATTGATAC 73993
>seq3
Length=2676204
Score = 96.9 bits (106), Expect = 3e-15
Identities = 155/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262
|||| |||||||| || || || || |||||| | || || ||| | || |||| |||
Sbjct 1950223 TCGTTAAGACTCTTACCGGAAAGACCATCACCCTTGAGGTCGAATCTTCAGACACCATCG 1950164
Query 31263 A-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321
| |||| | | | ||| | | ||||||||||| | || |||||||| || ||| |
Sbjct 1950163 ACAACGTTAAGTCTAAGATTCAAG-ACAAGGAAGGCATTCCTCCCGACCAACAACGTTTG 1950105
Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381
|| |||||||| || || |||||||| | || | ||||||||| || || ||
Sbjct 1950104 ATTTTCGCTGGAAAGCAACTGGAAGACGGTCGCACCCTTTCCGATTATAATATCCAGAAG 1950045
Query 31382 GAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| || || ||||| |||| || ||||| | || ||||
Sbjct 1950044 GAGTCTACCCTTCACTTGGTCCTCAGACTTCGTGGTGGTA 1950005
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445764026293920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |