Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq38 147 2e-30 seq35 82.4 7e-11 >seq38 Length=269250 Score = 147 bits (162), Expect = 2e-30 Identities = 397/600 (66%), Gaps = 12/600 (2%) Strand=Plus/Minus Query 37957 ACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCT 38016 ||||| ||| |||||||||||| || ||||| |||| ||| || ||| ||||| Sbjct 55957 ACATCTGCTAAACCTGGACATTCGTTGGGGCACATGAGAGTCCAATCCCCATTCTTTTCA 55898 Query 38017 ACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTA-AATAAATCTTTGGTTCTATA 38075 || || | ||| |||| |||||| | ||| || || ||| || | ||| | | | Sbjct 55897 ACACGCTTCATGAATAGATCAGGAATCCACAAGGC-GTAGAAGAGATCGCGTGCACGAAC 55839 Query 38076 TTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGG 38135 |||||| || || ||| || | || || || || || | ||| || |||||||| Sbjct 55838 TTCTTCTTTGCCATGATTTTTGCGTAGATCAAGGAACTCAAAAACATCCGCATGCCATGG 55779 Query 38136 TTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAAC 38195 || | |||| | | || || || | |||| ||| || |||| || |||||| | Sbjct 55778 CTCAAGGTAAACAGCAAAGGCACCAGGACGCTTATTACCACCTTGATCAACATATCTGGC 55719 Query 38196 TGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGA 38255 ||||| || | | || | |||||| || ||||| ||||| || ||||| |||||| Sbjct 55718 AGTGTTGTTGAAAACTCGGAGCATAGGAACGATACCGTTAGAGTTTCCGTTGGTACCGGC 55659 Query 38256 TATATAAGTACCCTTAGCTCGTAT--ATTACTTATCGACAATCCTATTCCACCTGCATGT 38313 || || | || |||| || || | | | || | || || ||||| |||| Sbjct 55658 AATGTATGCGCCAGTAGCACGGATTCGGTGAATGTTGAGA--CCAATACCACCGGCATTC 55601 Query 38314 TTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTT 38373 ||||| || | ||| || || || ||||| | ||||| || |||||||| ||||| Sbjct 55600 TTTGAGATCATAGCACAAATCTTCAAAGTATCGTAAATACCATCAATACTGTCCTCCTTC 55541 Query 38374 ATTGGTAGTATA---AAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAAT 38430 || || | ||| || || || | ||| | |||||| || || || | | Sbjct 55540 AT--GTCG-ATAAGGAAGCATGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGT 55484 Query 38431 GTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCA 38490 || || || |||||| |||| | || | |||| | || |||||||| || || Sbjct 55483 GTTGGCGAGGCATGTGTGAAGTACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTT 55424 Query 38491 TCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCT 38550 || |||||| | ||||||||||| | | || | ||| | ||| |||||||| | |||| Sbjct 55423 TCAATATCATCACCGTGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCT 55364 >seq35 Length=307329 Score = 82.4 bits (90), Expect = 7e-11 Identities = 174/259 (67%), Gaps = 3/259 (1%) Strand=Plus/Minus Query 11925 TTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAAC 11984 |||| || ||||| || ||||| ||||| || || ||||| ||||||||||||| Sbjct 73920 TTTCGGAGTGAATGTTCTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCCTCTGGGA 73861 Query 11985 ACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATG 12044 ||| || || || |||| || | || ||||| || ||||| || || | | Sbjct 73860 TCTGAACTTCACCACTGAATCGCTCAACCAAGTTCTCGTTGACAATTCCGTCTGATGCGG 73801 Query 12045 CAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAAT---TTATCCC 12101 | || ||||| || | || || ||||| ||||| | | | | | || | || Sbjct 73800 CGAAGAATGCGAGAACGTGGGAGATGAAGTAACGCTCGTCATCATTGAGTCTGTTGTTCC 73741 Query 12102 AATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATT 12161 | || | | ||| ||||| ||||| | ||||| ||||||| ||| |||| ||| || Sbjct 73740 AGTCGTGGAGATCCTTTGACAAATCAATCTCTTCTGCGGTCCAGAAAGATGCCTCTGCTT 73681 Query 12162 GTTTATACATTTTCCAGAT 12180 ||| ||||| | |||||| Sbjct 73680 TTTTGTACATCTGCCAGAT 73662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468522305105440