Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq38 147 2e-30
seq35 82.4 7e-11
>seq38
Length=269250
Score = 147 bits (162), Expect = 2e-30
Identities = 397/600 (66%), Gaps = 12/600 (2%)
Strand=Plus/Minus
Query 37957 ACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCT 38016
||||| ||| |||||||||||| || ||||| |||| ||| || ||| |||||
Sbjct 55957 ACATCTGCTAAACCTGGACATTCGTTGGGGCACATGAGAGTCCAATCCCCATTCTTTTCA 55898
Query 38017 ACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTA-AATAAATCTTTGGTTCTATA 38075
|| || | ||| |||| |||||| | ||| || || ||| || | ||| | | |
Sbjct 55897 ACACGCTTCATGAATAGATCAGGAATCCACAAGGC-GTAGAAGAGATCGCGTGCACGAAC 55839
Query 38076 TTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGG 38135
|||||| || || ||| || | || || || || || | ||| || ||||||||
Sbjct 55838 TTCTTCTTTGCCATGATTTTTGCGTAGATCAAGGAACTCAAAAACATCCGCATGCCATGG 55779
Query 38136 TTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAAC 38195
|| | |||| | | || || || | |||| ||| || |||| || |||||| |
Sbjct 55778 CTCAAGGTAAACAGCAAAGGCACCAGGACGCTTATTACCACCTTGATCAACATATCTGGC 55719
Query 38196 TGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGA 38255
||||| || | | || | |||||| || ||||| ||||| || ||||| ||||||
Sbjct 55718 AGTGTTGTTGAAAACTCGGAGCATAGGAACGATACCGTTAGAGTTTCCGTTGGTACCGGC 55659
Query 38256 TATATAAGTACCCTTAGCTCGTAT--ATTACTTATCGACAATCCTATTCCACCTGCATGT 38313
|| || | || |||| || || | | | || | || || ||||| ||||
Sbjct 55658 AATGTATGCGCCAGTAGCACGGATTCGGTGAATGTTGAGA--CCAATACCACCGGCATTC 55601
Query 38314 TTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTT 38373
||||| || | ||| || || || ||||| | ||||| || |||||||| |||||
Sbjct 55600 TTTGAGATCATAGCACAAATCTTCAAAGTATCGTAAATACCATCAATACTGTCCTCCTTC 55541
Query 38374 ATTGGTAGTATA---AAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAAT 38430
|| || | ||| || || || | ||| | |||||| || || || | |
Sbjct 55540 AT--GTCG-ATAAGGAAGCATGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGT 55484
Query 38431 GTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCA 38490
|| || || |||||| |||| | || | |||| | || |||||||| || ||
Sbjct 55483 GTTGGCGAGGCATGTGTGAAGTACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTT 55424
Query 38491 TCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCT 38550
|| |||||| | ||||||||||| | | || | ||| | ||| |||||||| | ||||
Sbjct 55423 TCAATATCATCACCGTGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCT 55364
>seq35
Length=307329
Score = 82.4 bits (90), Expect = 7e-11
Identities = 174/259 (67%), Gaps = 3/259 (1%)
Strand=Plus/Minus
Query 11925 TTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAAC 11984
|||| || ||||| || ||||| ||||| || || ||||| |||||||||||||
Sbjct 73920 TTTCGGAGTGAATGTTCTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCCTCTGGGA 73861
Query 11985 ACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATG 12044
||| || || || |||| || | || ||||| || ||||| || || | |
Sbjct 73860 TCTGAACTTCACCACTGAATCGCTCAACCAAGTTCTCGTTGACAATTCCGTCTGATGCGG 73801
Query 12045 CAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAAT---TTATCCC 12101
| || ||||| || | || || ||||| ||||| | | | | | || | ||
Sbjct 73800 CGAAGAATGCGAGAACGTGGGAGATGAAGTAACGCTCGTCATCATTGAGTCTGTTGTTCC 73741
Query 12102 AATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATT 12161
| || | | ||| ||||| ||||| | ||||| ||||||| ||| |||| ||| ||
Sbjct 73740 AGTCGTGGAGATCCTTTGACAAATCAATCTCTTCTGCGGTCCAGAAAGATGCCTCTGCTT 73681
Query 12162 GTTTATACATTTTCCAGAT 12180
||| ||||| | ||||||
Sbjct 73680 TTTTGTACATCTGCCAGAT 73662
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468522305105440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |