Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq38 230 3e-55 seq35 132 6e-26 >seq38 Length=269250 Score = 230 bits (254), Expect = 3e-55 Identities = 1305/2064 (63%), Gaps = 47/2064 (2%) Strand=Plus/Minus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 ||||||||||| || || || || | | ||||||| |||||||||||| || || | | Sbjct 57127 GTGAATTGAATAGGTGCTGAGGCAGCCATAGTACGTAAATAGTACATTCCGGTCTTCAAA 57068 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || | |||| || ||||||||| || | ||| | ||||| || Sbjct 57067 CCCAATTTCCAACCAGCAAAATGCATGGATGTAATCTTGCCCATTGTAGGATCCTTCATG 57008 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 || || ||||| |||||| |||||| ||||| || || | || |||||||||| | Sbjct 57007 TGAATGTTCATTGATTGAGATTGATCAATGAATGCACCACGATCAGCAGCCATTTGAACA 56948 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078 || || ||| | |||||||||| ||| || |||| ||| || || |||||| Sbjct 56947 ATTGTTCGTTGGGAGATTTCCCAAACAGTCTTGTAAAGAGCCTTGATGTCAGCTGGAATA 56888 Query 65079 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135 || | |||| ||||||||||||||||| || || || | ||||| || | ||| | Sbjct 56887 TTGGGGATATTTTGAATGGATCCACCATCAGCAATGATACGGTTCTTCATATTGTCAGAC 56828 Query 65136 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 65195 || | | ||| | | | || || |||||||| ||||| |||||||| Sbjct 56827 CAGAGACCCATATCGACAAGGTCCTTGAGAAGCCATGGATTAACGACTTGGAATTCTCCG 56768 Query 65196 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 65255 | | || | |||| ||| || || || || ||||| | | | || || || Sbjct 56767 GCAAGAACACGACGAGAGTAGATGTTTGAAGTGTAAGGTTCGAAACATTCGTTGAAGCCA 56708 Query 65256 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 65315 | |||||| | || ||||| ||||||||||| || | | | || | | ||| Sbjct 56707 AGAATTTGGGATGTGCTAGCAGTAGGCATAGGTGCAACTAGGAGAGAGTTGCGGATTCCG 56648 Query 65316 TATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNN 65375 | | |||| | || | || ||||||| ||| | ||| | ||| ||| Sbjct 56647 TGTTGCTTGATGGATTGCTTCAAAGAGTCCCAATCCCACAAATCAGTAGGTGTAACCCCC 56588 Query 65376 NNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGT 65435 ||| || ||| ||| | | || ||| ||| || |||||||| Sbjct 56587 CACATATCGTATTGAAGTTCACCCTTAGAGACTGGGGAGCCTTGATAGGTTTCGTATGGG 56528 Query 65436 CC---TTCCTTCTC-AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 65491 || |||||| | | || | | || | | || ||| ||| || ||||| || Sbjct 56527 CCAAGTTCCTTTGCGATCTCG-ACGGAAGAGGTC---AAGGCAGCGTGGTAGATGGTCTC 56472 Query 65492 GAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG--A 65549 ||| || | | || || | || ||||| | ||||||||| | ||||| | Sbjct 56471 GAAAATTTGTATGTTGAGGTGTTTGGCTTCTGGAGAGTCAAATGGA-AGACGAAGAGCCA 56413 Query 65550 ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 65609 | ||| || || || | ||||||||||||| | ||||||||| ||| | ||| | Sbjct 56412 AGAAA-GCATCAGCAAGACCTTGAACACCAACAGCGATAGGTCGATGACGGAAATT-GCT 56355 Query 65610 ATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 65668 |||| || |||| | ||||| || || || || ||||| ||||| | ||||| || Sbjct 56354 TTTTCGGGCCTCTGCGACTGGATAGTAGTTGATGTCAATAATCTTATTCAAGTTTCTAAC 56295 Query 65669 AATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCTCATCTA---TTAC 65722 || |||| ||| || || | || || | |||||| | || ||||| | | || Sbjct 56294 AACAACTTGGACAACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCATTCATGTTGAC 56235 Query 65723 -AAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 65781 ||| || | || || | || |||| ||||| || ||||||| | | | | Sbjct 56234 GAAAGTTGGT-AAAGCGATGGAAGCCAAGTTACAGCAAGCAACCTCATCTGGTGCAGAGT 56176 Query 65782 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 65841 | | | || || ||||| | ||| | || || || | || | ||| || | Sbjct 56175 ACTCAACGATTTCTGTGCACAAATTGGAGCTGCGAATAGTACCCAGGTTCTTTTGGTTGC 56116 Query 65842 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 65901 |||| ||||| || |||||||| ||||| ||||| ||| | || || || | |||| | Sbjct 56115 TCTTCTTGTTGCATGCATCCTTGTAAAGCATGAAGGGATTTCCGGTCTCGGTTTGAGCCT 56056 Query 65902 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTT---TTCTC 65958 | | ||| | | ||| | | |||||| | |||| ||| | ||| | | Sbjct 56055 CAAGAATGGAGTACCAAAGTTTTTGAGCCT---TGATAGTCTTGCGACCCTTGCCTGCCT 55999 Query 65959 TTTCGTA--TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGG 66016 ||||||| ||| | | | |||||||| || || |||||| | || || || Sbjct 55998 TTTCGTAACCCTCGTAGAGAGCC--TCGAACTCCTCGCCATAAACATCTGCTAAACCTGG 55941 Query 66017 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 66076 |||||| | || ||||| | | ||| || || | | | || || ||||| || || Sbjct 55940 ACATTCGTTGGGGCACATGAGAGTCCAATCCCCATTCTTTTCAACACGCTTCATGAATAG 55881 Query 66077 ATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 66136 |||||||||||| | || || | ||| | | | | ||| || || || ||| Sbjct 55880 ATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCACGAACTTCTTCTTTGCCATGATT 55821 Query 66137 CTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCAT 66196 || ||||| |||||| | | || ||| |||||| || || | ||| | || | Sbjct 55820 TTTGCGTAGATCAAGGAACTCAAAAACATCCGCATGCCATGGCTCAAGGTAAACAGCAAA 55761 Query 66197 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 66256 | ||||| || || || || || ||||| | ||||| || ||||| || |||||| Sbjct 55760 GGCACCAGGACGCTTATTACCACCTTGATCAACATATCTGGCAGTGTTGTTGAAAACTCG 55701 Query 66257 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGC 66316 | ||| |||| ||||| || || | || ||||| |||| || || ||| | || Sbjct 55700 GAGCATAGGAACGATACCGTTAGAGTTTCCGTTGGTACCGGCAATGTATGCGCCAGTAGC 55641 Query 66317 ACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 66375 ||| || | | | || | ||||| || || || || | || ||||| | || || Sbjct 55640 ACGGAT-TCGGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATAGCACAAA 55582 Query 66376 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 66435 || || ||||| || || || || ||||| || ||| |||||| | || || || Sbjct 55581 TCTTCAAAGTATCGTAAATACCATCAATACTGTCCTCCTTCATGTCGATAAGGAAGCATG 55522 Query 66436 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 66495 || | ||| | ||| |||||| || | || || || || || || || Sbjct 55521 ATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGTGTTGGCGAGGCATGTGTGAAGT 55462 Query 66496 ATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATT 66554 | || | || | | ||||| || || ||||| || ||||| || | ||||| Sbjct 55461 ACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCAATATCATCACCG-TGAATA 55403 Query 66555 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 66614 || || || |||||||| | ||| || || || | ||| | | ||| | | Sbjct 55402 CCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACTTTGCCATCAAGACGT 55343 Query 66615 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTT 66672 | | ||| || || | |||||| || ||||| || | || ||||| ||||| | Sbjct 55342 AGAAGGTATGAACGCTCGAGAGTTTTGAATCCAAAGTATTGATAGTTGAAA--TCTCGGT 55285 Query 66673 CGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACA-TCCATGGTAATA 66731 |||| | ||| | || ||||||| |||| || | | |||| ||| || | || | Sbjct 55284 CGTAGACAATGGCAGAATTGAGTTCCTCCTCATGTCTCATAAC-ACATTCGAAAGT-TTC 55227 Query 66732 CTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTC 66790 |||| ||| || ||||| | | |||||| | || || ||| | | ||||||| Sbjct 55226 CTTGCTAATCATAGGAGATGCTGTGCCATTTCTGGGGTTTGTATACTGGTATAAATCGCG 55167 Query 66791 CATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGC 66850 || || | || |||| || |||| |||||| || || || || || || | ||| Sbjct 55166 AATAACGTGCGAGAACTGTTTCTTGGTTTGTTTGTGGAGGTTGGAGACTGCAATACGAGC 55107 Query 66851 GGCTATAATGGCATAATCCGGATG 66874 |||| |||||||||||| ||||| Sbjct 55106 AGCTAGAATGGCATAATCGGGATG 55083 >seq35 Length=307329 Score = 132 bits (146), Expect = 6e-26 Identities = 566/902 (63%), Gaps = 63/902 (7%) Strand=Plus/Minus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 |||||||| ||||| || | |||||||| || ||||| || || | || || || || Sbjct 74560 TTTTGGTAATCACCAACTCTCTTTTCGAAGAAGTTAGTCTTGCCGGCCAAGGAAATGTTC 74501 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986 |||||||| || ||||| ||| | || || | ||| | ||||| | | Sbjct 74500 TCCATGAAGTCAAATGGGTTGGCAGACTTGTAGACTTTGTCGTTACCCAAAGCGATGAGG 74441 Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046 | | ||| || || ||||| || ||| ||||| | | ||||| || | ||| Sbjct 74440 AGACGATCAGCAACGAATTCGATGTATTGCTTCATGAGGGTGGAGTTCATGCCCAAAAGA 74381 Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 36106 | ||||||||| | || | |||||||| ||||| | ||| || || || |||| Sbjct 74380 GCACAAGGAAGAGCCTCGGTCAAGAATTCTTGCTCAATTGCGACGGCCTCGGTGATAACG 74321 Query 36107 GATATTACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 36165 | || | || ||| | || || | | | ||| || | | |||||||| Sbjct 74320 TCTTGGACGGCTTGCTTGGATGGGCGG-TGCTTGAGATGGGAGAAGAGGAGGCATGCGAA 74262 Query 36166 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 36225 |||| ||| ||||| ||||| | || | ||||||||| || |||||||||| ||| Sbjct 74261 ATCGGTGTGGAGACCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCGGCCAT 74202 Query 36226 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 36285 || |||||||| || ||||| || || || || || ||||| || ||||| || ||||| Sbjct 74201 AAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGATCCGGAGAAGAAGATGCCTTC 74142 Query 36286 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGTATCCACTT 36342 || || || || || | ||| | | || | || | || || ||||| || Sbjct 74141 AACGGCAGCGAATGCGACAAGACGTTGAGCAAAGGTGGAGTTCTTATCTTGAATCCATTT 74082 Query 36343 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA------------------------- 36377 |||||| ||||||||||| || | ||||| | Sbjct 74081 GACAGCCCAGTCGGCCTTCTTCTTGATGCAAGGAACTATCAAGGTTGTTAGTTGAATTCA 74022 Query 36378 --------------------------TTGTCTCTATAGCATTAAAGAGATA-Gt-ttttt 36409 | || || |||||||| ||||| || || |||| Sbjct 74021 TGTAACAATGTATGATTGTAACCTACTGGTATCAATAGCATTGAAGAGGTATGTCTTTTG 73962 Query 36410 tCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTT 36469 | || | || || | |||||| || || | |||| || |||| || |||||||| Sbjct 73961 TGCTTGC--TCCTTGATATATGTGTCGATGAGAAGAGAGTATGTTTCGGAGTGAATGTTC 73904 Query 36470 TCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAA 36529 || || ||||| || |||||||| |||| ||||| | ||||| ||||| || Sbjct 73903 TCCATCATGATTTGGAAACCGTAGAAGCATCGTGCCTCTGGGATCTGAACTTCACCACTG 73844 Query 36530 AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 36589 ||||| || | || || || || || |||||||| || || || || || | || Sbjct 73843 AATCGCTCAACCAAGTTCTCGTTGACAATTCCGTCTGATGCGGCGAAGAATGCGAGAACG 73784 Query 36590 TGTTTTATAAAATATTTTTCGTTTGGTGTTAGT---TTATTCCAATCATTGATATCTTTA 36646 || || || || |||| | ||| || ||||| || | || ||| || Sbjct 73783 TGGGAGATGAAGTAACGCTCGTCATCATTGAGTCTGTTGTTCCAGTCGTGGAGATCCTTT 73724 Query 36647 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 36706 || | ||| | ||||| | ||||| || ||||||||||| ||||| ||||| | |||| Sbjct 73723 GACAAATCAATCTCTTCTGCGGTCCAGAAAGATGCCTCTGCTTTTTTGTACATCTGCCAG 73664 Query 36707 AT 36708 || Sbjct 73663 AT 73662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658169295229840