Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq38 271 1e-67 seq35 159 5e-34 >seq38 Length=269250 Score = 271 bits (300), Expect = 1e-67 Identities = 1321/2068 (64%), Gaps = 55/2068 (3%) Strand=Plus/Minus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 ||||||||||| || || || || | | ||||||| |||||||||||| || || | | Sbjct 57127 GTGAATTGAATAGGTGCTGAGGCAGCCATAGTACGTAAATAGTACATTCCGGTCTTCAAA 57068 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || | |||| || |||||||| || | ||| | ||||| || Sbjct 57067 CCCAATTTCCAACCAGCAAAATGCATGGATGTAATCTTGCCCATTGTAGGATCCTTCATG 57008 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 || || ||||| |||||| |||||| ||||| || || | || |||||||||| | Sbjct 57007 TGAATGTTCATTGATTGAGATTGATCAATGAATGCACCACGATCAGCAGCCATTTGAACA 56948 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957 || || ||| | |||||||||| ||| || |||| ||| || || |||||| Sbjct 56947 ATTGTTCGTTGGGAGATTTCCCAAACAGTCTTGTAAAGAGCCTTGATGTCAGCTGGAATA 56888 Query 78958 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014 || | |||| ||||||||||||||||| || || || | ||||| || | ||| | Sbjct 56887 TTGGGGATATTTTGAATGGATCCACCATCAGCAATGATACGGTTCTTCATATTGTCAGAC 56828 Query 79015 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 79074 || | | ||| | | | || || |||||||| ||||| |||||||| Sbjct 56827 CAGAGACCCATATCGACAAGGTCCTTGAGAAGCCATGGATTAACGACTTGGAATTCTCCG 56768 Query 79075 GACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCC 79134 | | || | |||| ||| || || || || ||||| | |||| || || Sbjct 56767 GCAAGAACACGACGAGAGTAGATGTTTGAAGTGTAAGGTTCGAAACATTCGTTGAAGCCA 56708 Query 79135 AAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 79194 | |||||| | || || || ||||||||||| || | | | || | | ||| Sbjct 56707 AGAATTTGGGATGTGCTAGCAGTAGGCATAGGTGCAACTAGGAGAGAGTTGCGGATTCCG 56648 Query 79195 TATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTC 79254 | | |||| | || | ||| ||||||||||| | ||||| || ||| | Sbjct 56647 TGTTGCTTGATGGATTGCTTCAAAGAGTCCCAATCCCACAAATCAGTAGGTGTAACCCCC 56588 Query 79255 CAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGT 79314 || | ||| ||||| || ||| ||| | || ||| || ||||| || || Sbjct 56587 CACATATCGTATTGAAGTTCACCCTTAGAGACTGGGGAGCCTTGATAGGTTTCGTATGGG 56528 Query 79315 CC---TTCCTTTTCGGCTAATTC-AC--AACTCGCCTCTAATGCTCCGTAATAAATGGTT 79368 || ||||||| || | || || || | | || || ||| || ||||| Sbjct 56527 CCAAGTTCCTTTGCG---ATCTCGACGGAAGAGGTC---AAGGCAGCGTGGTAGATGGTC 56474 Query 79369 TCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAG- 79427 |||||||| | | ||||| | || |||||| | ||||||||| | ||||| Sbjct 56473 TCGAAAATTTGTATGTTGAGGTGTTTGGCTTCTGGAGAGTCAAATGGAAGACG-AAGAGC 56415 Query 79428 -AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 79486 || ||| || || || | ||||||||||||| | ||||||||| ||| | ||| | Sbjct 56414 CAAGAAA-GCATCAGCAAGACCTTGAACACCAACAGCGATAGGTCGATGACGGAAATT-G 56357 Query 79487 AAATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTG 79545 |||| | | |||| | ||||| || || || || ||||| ||||| | || || Sbjct 56356 CTTTTTCGGGCCTCTGCGACTGGATAGTAGTTGATGTCAATAATCTTATTCAAGTTTCTA 56297 Query 79546 ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATC-----TATT- 79599 || | |||| ||| || || | || || | |||||| | ||| || | || Sbjct 56296 ACAACAACTTGGACAACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCATTCATGTTG 56237 Query 79600 AC-AAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 79658 || ||| || | || |||| || |||| ||||| || ||||||| | | | Sbjct 56236 ACGAAAGTTGGTAAA-GCGATGGAAGCCAAGTTACAGCAAGCAACCTCATCTGGTGCAGA 56178 Query 79659 ATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATT 79718 || | | ||||| ||||| | || | ||| || || | || | ||| || Sbjct 56177 GTACTCAACGATTTCTGTGCACAAATTGGAGCTGCGAATAGTACCCAGGTTCTTTTGGTT 56118 Query 79719 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778 ||||| ||||| || |||||||| ||||| ||||| ||| | || || || | |||| Sbjct 56117 GCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAAGGGATTTCCGGTCTCGGTTTGAGC 56058 Query 79779 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTC- 79837 || | ||| | | ||| | | ||||||| || || |||| | ||| || Sbjct 56057 CTCAAGAATGGAGTACCAAAGTTTTTGAGCCTTGAT---AGTCTTGCGACCCTTGCCTGC 56001 Query 79838 --TTTCGTATTGT--GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCA 79893 ||||||| ||| | | | |||||||| || || ||||||| |||| || Sbjct 56000 CTTTTCGTAACCCTCGTAGAGAGCC--TCGAACTCCTCGCCATAAACATCTGCTAAACCT 55943 Query 79894 GGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAA 79951 |||||||||| || ||||| | | ||| || |||| || ||| || || ||||| | Sbjct 55942 GGACATTCGTTGGGGCACATGAGAGTCCAATCCCCAT--TCTTTTCAACACGCTTCATGA 55885 Query 79952 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTG 80011 | |||||||||||||| | || || ||||| | | | | || || || || Sbjct 55884 ATAGATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCACGAACTTCTTCTTTGCCAT 55825 Query 80012 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 80071 ||| || ||||| |||||| | | || ||| | |||||| || || | ||| | | Sbjct 55824 GATTTTTGCGTAGATCAAGGAACTCAAAAACATCCGCATGCCATGGCTCAAGGTAAACAG 55765 Query 80072 CCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 80131 | | | || || || || || || || ||||| | ||||| || ||||| || ||| Sbjct 55764 CAAAGGCACCAGGACGCTTATTACCACCTTGATCAACATATCTGGCAGTGTTGTTGAAAA 55705 Query 80132 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCAC 80191 ||| | ||| |||| ||||| || || | || ||||| |||| || || ||| Sbjct 55704 CTCGGAGCATAGGAACGATACCGTTAGAGTTTCCGTTGGTACCGGCAATGTATGCGCCAG 55645 Query 80192 TGGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 80250 | ||||| || | | | || | ||||| || || || || | || ||||| | || Sbjct 55644 TAGCACGGAT-TCGGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATAGCA 55586 Query 80251 CATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAA 80310 || || || ||||| || || || || || || || || |||||| | || || Sbjct 55585 CAAATCTTCAAAGTATCGTAAATACCATCAATACTGTCCTCCTTCATGTCGATAAGGAAG 55526 Query 80311 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 80370 || || | ||| | ||| |||||| || | || || || || || || Sbjct 55525 CATGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGTGTTGGCGAGGCATGTGTG 55466 Query 80371 AACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATG 80429 || | || | |||| | ||||| || || ||||| ||| ||||| || | || Sbjct 55465 AAGTACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCAATATCATCACCG-TG 55407 Query 80430 AATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTAT 80489 ||| || || || |||||||| | ||| || || || | ||| | | ||| || | Sbjct 55406 AATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACTTTGCCATCAAG 55347 Query 80490 TTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCT 80547 | | ||| || || | |||||| || ||||| || | || ||||| ||| Sbjct 55346 ACGTAGAAGGTATGAACGCTCGAGAGTTTTGAATCCAAAGTATTGATAGTTGAAA--TCT 55289 Query 80548 CGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACA-TCCATGGT 80606 || ||||| | ||| | || ||||||| |||| || | | |||| ||| || | || Sbjct 55288 CGGTCGTAGACAATGGCAGAATTGAGTTCCTCCTCATGTCTCATAAC-ACATTCGAAAGT 55230 Query 80607 GATACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAAT 80665 | |||| ||| || ||||| | | |||||| | || || ||| | | |||||| Sbjct 55229 -TTCCTTGCTAATCATAGGAGATGCTGTGCCATTTCTGGGGTTTGTATACTGGTATAAAT 55171 Query 80666 CCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTC 80725 | || || | || |||| || |||| ||||| || || || || || || | Sbjct 55170 CGCGAATAACGTGCGAGAACTGTTTCTTGGTTTGTTTGTGGAGGTTGGAGACTGCAATAC 55111 Query 80726 TGGCGGCTAAAATGGCATAATCTGGATG 80753 || |||| |||||||||||| ||||| Sbjct 55110 GAGCAGCTAGAATGGCATAATCGGGATG 55083 >seq35 Length=307329 Score = 159 bits (176), Expect = 5e-34 Identities = 345/513 (67%), Gaps = 5/513 (1%) Strand=Plus/Minus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 |||||||| ||||| || | |||||||| || ||||| || || |||| || || || Sbjct 74560 TTTTGGTAATCACCAACTCTCTTTTCGAAGAAGTTAGTCTTGCCGGCCAAGGAAATGTTC 74501 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 |||||||| ||||| || |||| | || || | ||| | ||||| | | Sbjct 74500 TCCATGAAGTCAAATGGGTTGGCAGACTTGTAGACTTTGTCGTTACCCAAAGCGATGAGG 74441 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 | | ||| || || ||||| || ||| ||||| | | ||||| || | ||| Sbjct 74440 AGACGATCAGCAACGAATTCGATGTATTGCTTCATGAGGGTGGAGTTCATGCCCAAAAGA 74381 Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908 | ||||||||| | || | |||||||| ||||| | || || || || |||| Sbjct 74380 GCACAAGGAAGAGCCTCGGTCAAGAATTCTTGCTCAATTGCGACGGCCTCGGTGATAACG 74321 Query 49909 GATCTAACGGTTT-CTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 49967 | |||| || ||| | || || ||| | ||| || | | |||||||| Sbjct 74320 TCTTGGACGGCTTGCTTGGATGGGCGG-TGCTTGAGATGGGAGAAGAGGAGGCATGCGAA 74262 Query 49968 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 50027 |||| ||| ||||| ||||| | || ||||||||||| || |||||||||| ||| Sbjct 74261 ATCGGTGTGGAGACCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCGGCCAT 74202 Query 50028 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTC 50087 || |||||||| || ||||| || || || || || || || || |||||||| ||||| Sbjct 74201 AAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGATCCGGAGAAGAAGATGCCTTC 74142 Query 50088 TACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG---CTGTCATGTATCCACTT 50144 || || || || || ||||| | | || | ||| | | || || ||||| || Sbjct 74141 AACGGCAGCGAATGCGACAAGACGTTGAGCAAAGGTGGAGTTCTTATCTTGAATCCATTT 74082 Query 50145 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 50177 |||||| ||||||||||| || | ||||| Sbjct 74081 GACAGCCCAGTCGGCCTTCTTCTTGATGCAAGG 74049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718264975218640