Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq38 214 2e-50 seq35 154 2e-32 >seq38 Length=269250 Score = 214 bits (236), Expect = 2e-50 Identities = 1301/2065 (63%), Gaps = 49/2065 (2%) Strand=Plus/Minus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || || ||||| || | || || || | ||||||| ||||||||| || || || | | Sbjct 57127 GTGAATTGAATAGGTGCTGAGGCAGCCATAGTACGTAAATAGTACATTCCGGTCTTCAAA 57068 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAGCTAGGATCGGCTAT 70919 || | |||| || ||||||||| || | ||| || | ||||||| || Sbjct 57067 CCCAATTTCCAACCAGCAAAATGCATGGATGTAATCTTGCCCATTG-TAGGATCCTTCAT 57009 Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979 |||||| ||||| || ||| |||||| ||||| || || | || |||||||||| | Sbjct 57008 GTGAATGTTCATTGATTGAGATTGATCAATGAATGCACCACGATCAGCAGCCATTTGAAC 56949 Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 71039 || || ||| | |||||||||| ||| || |||| ||| || || |||||| Sbjct 56948 AATTGTTCGTTGGGAGATTTCCCAAACAGTCTTGTAAAGAGCCTTGATGTCAGCTGGAAT 56889 Query 71040 GTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096 || | |||| ||||||||||||||||| ||||| || | || || || | ||| Sbjct 56888 ATTGGGGATATTTTGAATGGATCCACCATCAGCAATGATACGGTTCTTCATATTGTCAGA 56829 Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156 ||| | | ||| | | | || || |||||||| ||||| |||||||| Sbjct 56828 CCAGAGACCCATATCGACAAGGTCCTTGAGAAGCCATGGATTAACGACTTGGAATTCTCC 56769 Query 71157 AGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCC 71216 | | || | ||||| ||| || || || || ||||| | | || || || Sbjct 56768 GGCAAGAACACGACGAGAGTAGATGTTTGAAGTGTAAGGTTCGAAACATTCGTTGAAGCC 56709 Query 71217 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACC 71276 | |||||| | || ||||| ||||||||||| || | ||| || | | || Sbjct 56708 AAGAATTTGGGATGTGCTAGCAGTAGGCATAGGTGCAACTAGGAGAGAGTTGCGGATTCC 56649 Query 71277 ATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNN 71336 ||| ||| | || | ||| ||||||| ||| | ||| | ||| ||| Sbjct 56648 GTGTTGCTTGATGGATTGCTTCAAAGAGTCCCAATCCCACAAATCAGTAGGTGTAACCCC 56589 Query 71337 NNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGG 71396 || ||| | || ||| ||| || |||||||| Sbjct 56588 CCACATATCGTATTGAAGTTCACCCTTAGAGACTGGGGAGCCTTGATAGGTTTCGTATGG 56529 Query 71397 TCC---TTCTTTTTCGG-CTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTT 71452 || ||| ||| || || | | || | | || || | | || ||||| | Sbjct 56528 GCCAAGTTCCTTTGCGATCTCGA-CGGAAGAGGTC---AAGGCAGCGTGGTAGATGGTCT 56473 Query 71453 CGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAG-- 71510 ||||||| | | ||||| | || ||||| || ||||||||| | ||||| Sbjct 56472 CGAAAATTTGTATGTTGAGGTGTTTGGCTTCTGGAGAGTCAAATGGAAGACG-AAGAGCC 56414 Query 71511 AATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGA 71570 || ||| || || || | |||||||| |||| | ||||||||| || | ||| | Sbjct 56413 AAGAAA-GCATCAGCAAGACCTTGAACACCAACAGCGATAGGTCGATGACGGAAATT-GC 56356 Query 71571 AATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 71629 |||| | | |||| | ||||| || || || || ||||| ||||| | ||||| | Sbjct 56355 TTTTTCGGGCCTCTGCGACTGGATAGTAGTTGATGTCAATAATCTTATTCAAGTTTCTAA 56296 Query 71630 CTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCTCCCATCTAT-TACA 71685 | | |||| ||| || || | || || | |||||| | || | ||| || | | Sbjct 56295 CAACAACTTGGACAACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCATTCATGTTGA 56236 Query 71686 AACACGTTC--AAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCAT 71743 | ||| || || | || |||| ||||| || ||||||| | | | | Sbjct 56235 CGAAAGTTGGTAAAGCGATGGAAGCCAAGTTACAGCAAGCAACCTCATCTGGTGCAGAGT 56176 Query 71744 ATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 71803 | | | ||||| ||||| | ||| | || || || | || | ||| || | Sbjct 56175 ACTCAACGATTTCTGTGCACAAATTGGAGCTGCGAATAGTACCCAGGTTCTTTTGGTTGC 56116 Query 71804 TCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATT 71863 |||| ||||| || |||||||| ||||| || || ||| | || || || | |||| | Sbjct 56115 TCTTCTTGTTGCATGCATCCTTGTAAAGCATGAAGGGATTTCCGGTCTCGGTTTGAGCCT 56056 Query 71864 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTC--- 71920 | | ||| | | ||| | | ||||||| || | ||||| | ||| || Sbjct 56055 CAAGAATGGAGTACCAAAGTTTTTGAGCCTTGAT---AGTCTTGCGACCCTTGCCTGCCT 55999 Query 71921 TTTCGTATTGT--GTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGG 71978 ||||||| ||| | | | |||||||| || || || ||| |||| || || Sbjct 55998 TTTCGTAACCCTCGTAGAGAGCC--TCGAACTCCTCGCCATAAACATCTGCTAAACCTGG 55941 Query 71979 ACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAG 72036 |||||| || || ||||| | | ||| || |||| || ||| || || ||||| || Sbjct 55940 ACATTCGTTGGGGCACATGAGAGTCCAATCCCCAT--TCTTTTCAACACGCTTCATGAAT 55883 Query 72037 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTA 72096 |||||||||||||| | || || ||||| | | | | || || || || | Sbjct 55882 AGATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCACGAACTTCTTCTTTGCCATGA 55823 Query 72097 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 72156 || || ||||| |||||| | | || ||| | |||||| || || | ||| | || Sbjct 55822 TTTTTGCGTAGATCAAGGAACTCAAAAACATCCGCATGCCATGGCTCAAGGTAAACAGCA 55763 Query 72157 ATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 72216 | | || || || || || || || ||||| | ||||| || ||||| || ||||| Sbjct 55762 AAGGCACCAGGACGCTTATTACCACCTTGATCAACATATCTGGCAGTGTTGTTGAAAACT 55703 Query 72217 CTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTG 72276 | | ||| |||| ||||| || || || ||||| |||| || || ||| | Sbjct 55702 CGGAGCATAGGAACGATACCGTTAGAGTTTCCGTTGGTACCGGCAATGTATGCGCCAGTA 55643 Query 72277 GCACGAATATTGCTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 72335 ||||| || | | | | || | ||||| || || || || | || ||||| | || || Sbjct 55642 GCACGGAT-TCGGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATAGCACA 55584 Query 72336 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 72395 || || ||||| || || || || ||||| || ||| |||||| | || || || Sbjct 55583 AATCTTCAAAGTATCGTAAATACCATCAATACTGTCCTCCTTCATGTCGATAAGGAAGCA 55524 Query 72396 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 72455 || | ||| | ||| |||||| || | || || || || || || || Sbjct 55523 TGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGTGTTGGCGAGGCATGTGTGAA 55464 Query 72456 CCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTA 72514 | || | |||| | ||||| || || ||||| ||| ||||| || | || | Sbjct 55463 GTACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCAATATCATCACCG-TGAA 55405 Query 72515 TTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTT 72574 | || || || |||||||| | ||| || || || | ||| | | ||| || | Sbjct 55404 TACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACTTTGCCATCAAGAC 55345 Query 72575 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCG 72632 | | ||| || || | |||||| || ||||| || | || ||||| ||||| Sbjct 55344 GTAGAAGGTATGAACGCTCGAGAGTTTTGAATCCAAAGTATTGATAGTTGAAA--TCTCG 55287 Query 72633 TTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGAT 72692 ||||| | ||| | |||||||||| |||| || | | |||| || | || | Sbjct 55286 GTCGTAGACAATGGCAGAATTGAGTTCCTCCTCATGTCTCATAACACATTCGAAAGT-TT 55228 Query 72693 ACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCT 72751 |||| ||| || ||||| | | |||||| | || || ||| | | ||||||| Sbjct 55227 CCTTGCTAATCATAGGAGATGCTGTGCCATTTCTGGGGTTTGTATACTGGTATAAATCGC 55168 Query 72752 CCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGG 72811 || || | || |||| || |||| ||||| || || || || || || | | Sbjct 55167 GAATAACGTGCGAGAACTGTTTCTTGGTTTGTTTGTGGAGGTTGGAGACTGCAATACGAG 55108 Query 72812 CGGCTAGAATGGCATAATCTGGATG 72836 | ||||||||||||||||| ||||| Sbjct 55107 CAGCTAGAATGGCATAATCGGGATG 55083 >seq35 Length=307329 Score = 154 bits (170), Expect = 2e-32 Identities = 574/904 (63%), Gaps = 67/904 (7%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 |||||||| ||||| || | |||||||| || |||||||| || |||| || || || Sbjct 74560 TTTTGGTAATCACCAACTCTCTTTTCGAAGAAGTTAGTCTTGCCGGCCAAGGAAATGTTC 74501 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 |||||||| ||||| || |||| | || || | ||| | ||||| | | Sbjct 74500 TCCATGAAGTCAAATGGGTTGGCAGACTTGTAGACTTTGTCGTTACCCAAAGCGATGAGG 74441 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 | | ||| || | |||||| || ||| ||||| | | ||||| || | ||| Sbjct 74440 AGACGATCAGCAACGAATTCGATGTATTGCTTCATGAGGGTGGAGTTCATGCCCAAAAGA 74381 Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013 | ||||||||| | || | |||||||| ||||| | ||| || || || |||| Sbjct 74380 GCACAAGGAAGAGCCTCGGTCAAGAATTCTTGCTCAATTGCGACGGCCTCGGTGATAACG 74321 Query 42014 GATCTT--ACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 42070 |||| || | || ||| | || || | | | ||| || | | |||||| Sbjct 74320 --TCTTGGACGGCTTGCTTGGATGGGCGG-TGCTTGAGATGGGAGAAGAGGAGGCATGCG 74264 Query 42071 AAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 42130 |||||| ||| ||||| || || | || | ||||||||| || |||||||||| | Sbjct 74263 AAATCGGTGTGGAGACCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCGGCC 74204 Query 42131 ATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCT 42190 || || |||||||| || ||||| || ||||| || || ||||| || |||||||| ||| Sbjct 74203 ATAAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGATCCGGAGAAGAAGATGCCT 74144 Query 42191 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGTATCCAC 42247 || || || || || || | ||| | | || | || | || || ||||| Sbjct 74143 TCAACGGCAGCGAATGCGACAAGACGTTGAGCAAAGGTGGAGTTCTTATCTTGAATCCAT 74084 Query 42248 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA----------------------- 42284 || |||||| ||||||||||| || | ||||| | Sbjct 74083 TTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGGAACTATCAAGGTTGTTAGTTGAATT 74024 Query 42285 ----------------------------TCGTTTCTATGGCATTAAAGAGATA-Gt-ttt 42314 | || || || ||||| ||||| || || ||| Sbjct 74023 CATGTAACAATGTATGATTGTAACCTACTGGTATCAATAGCATTGAAGAGGTATGTCTTT 73964 Query 42315 tttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGT 42374 | | || | || || | |||||| ||||| | |||| || |||| || ||||||| Sbjct 73963 TGTGCTTGC--TCCTTGATATATGTGTCGATGAGAAGAGAGTATGTTTCGGAGTGAATGT 73906 Query 42375 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTAC 42434 | || || || || || |||||||| |||| ||||| | | ||| ||||| || Sbjct 73905 TCTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCCTCTGGGATCTGAACTTCACCAC 73846 Query 42435 AAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 42494 ||||| ||| | || || ||||| || |||||||| || || || || || | | Sbjct 73845 TGAATCGCTCAACCAAGTTCTCGTTGACAATTCCGTCTGATGCGGCGAAGAATGCGAGAA 73786 Query 42495 CATGTTTTATAAAATATTTTTCGTC--CGGTG-TTAATTTATTCCAATCATTGATATCTT 42551 | || || || || ||||| | || | || ||||| || | || ||| | Sbjct 73785 CGTGGGAGATGAAGTAACGCTCGTCATCATTGAGTCTGTTGTTCCAGTCGTGGAGATCCT 73726 Query 42552 TAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCC 42611 | || | ||| | |||||| | ||||| || ||||| ||||| ||||| ||||| | || Sbjct 73725 TTGACAAATCAATCTCTTCTGCGGTCCAGAAAGATGCCTCTGCTTTTTTGTACATCTGCC 73666 Query 42612 AGAT 42615 |||| Sbjct 73665 AGAT 73662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671135626183760