Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq35 120 5e-22 seq38 107 3e-18 >seq35 Length=307329 Score = 120 bits (132), Expect = 5e-22 Identities = 199/282 (71%), Gaps = 4/282 (1%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | ||||||||||| || |||| || || ||||| | |||||| | ||| || Sbjct 73662 ATCTGGCAGATGTACAAAAAAGCAGAGGCATCTTTCTGGACCGCAGAAGAGATTGATTTG 73721 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||| || |||| ||| | | | | | ||| ||||| | || || || Sbjct 73722 TCAAAGGATCTCCACGACTGGAACAACAGACTCAATGATGACGAGCGTTACTTCATCTCC 73781 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG-TTGACACG 125197 ||| || | || ||||| |||| || || ||||| |||||||| || || |||| || Sbjct 73782 CACGTTCTCGCATTCTTCGCCGCATCAGACGGAATTGTCAACGAGAACTTGGTTGAG-CG 73840 Query 125198 ATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGA 125256 |||| | || ||| | || ||||||| ||||| ||||| ||||||||||||| Sbjct 73841 ATTCAGTGGTGAAGTTCAG-ATCCCAGAGGCACGATGCTTCTACGGTTTCCAAATCATGA 73899 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACA 125298 | |||||| | ||||| |||| |||||| || || |||| Sbjct 73900 TGGAGAACATTCACTCCGAAACATACTCTCTTCTCATCGACA 73941 >seq38 Length=269250 Score = 107 bits (118), Expect = 3e-18 Identities = 338/516 (66%), Gaps = 6/516 (1%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||| ||| | | || | || || |||||| || | | ||| || || || | Sbjct 55665 ACCAACGGAAACTCTAACGGTATCGTTCCTATGCTCCGAGTTTTCAACAACACTGCCA-G 55723 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 ||| ||| || || || ||||| || || || || | || || ||| | || || || Sbjct 55724 ATATGTTGATCAAGGTGGTAATAAGCGTCCTGGTGCCTTTGCTGTTTACCTTGAGCCATG 55783 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 ||| ||||| |||||||| || | || | |||||||| |||| ||||| | || Sbjct 55784 GCATGCGGATGTTTTTGAGTTCCTTGATCTACGCAAAAATCATGGCAAAGAAGAAGTTCG 55843 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 || | || | || || || | ||| | || ||| | ||||||||||| || | | Sbjct 55844 TGCACGCGATCTCTTCTACGCCTTGTGGATTCCTGATCTATTCATGAAGCGTGTTGAAAA 55903 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 ||| | |||| || ||||||||| || | || ||| | | ||| | || Sbjct 55904 GAATGGGGATTGGACTCTCATGTGCCCCAACGAATGTCCAGGTTTAGCAGATGTTTATGG 55963 Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAG-AGGGCCGATACGTGAGACGAG 97164 ||| ||||| ||||| ||| || ||||| | | ||| | || |||| | Sbjct 55964 CGAGGAGTTCGAGGCTCTCTACGAGGGTTACGAAAAGGCAGGCAAGGGTCGCAAGACTA- 56022 Query 97165 TCGATGCACGAGAACTGTGGAAGGCCA-TCGTGACGGCTCAGGTAGAGACTGGAACTCCG 97223 || | || | | |||| ||| | ||| || ||| |||||| ||||| |||| ||| Sbjct 56023 TCAAGGCTCAAAAACTTTGGTACTCCATTCTTGA-GGCTCAAACCGAGACCGGAAATCCC 56081 Query 97224 TACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATC 97283 | ||| || ||||||||| | || || ||||||||| || |||| || || Sbjct 56082 TTCATGCTTTACAAGGATGCATGCAACAAGAAGAGCAACCAAAAGAACCTGGGTACTATT 56141 Query 97284 AAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 |||||||| ||||||| ||||| || |||||| Sbjct 56142 CGCAGCTCCAATTTGTGCACAGAAATCGTTGAGTAC 56177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741055253859760