Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq18 109 4e-19 seq3 95.1 9e-15 seq17 89.7 4e-13 >seq18 Length=865119 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| || || ||||| ||||| || ||||| |||||||||||| || | | | || Sbjct 543459 TAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGGCCATC 543400 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| | ||| || || ||| | ||||| || ||||||||| ||||||||| || ||||| Sbjct 543399 TTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCCTTGTC 543340 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 || ||| ||| ||| | || ||||| ||| | || || || | ||| ||||| Sbjct 543339 CTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGT 543280 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || || || || || || || ||||| Sbjct 543279 TTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 543247 >seq3 Length=2676204 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| | || || |||||||| || || || || || || |||||| Sbjct 1950007 CCACCACGAAGTCTGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATATTATAATCGGAA 1950066 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | ||||||| | ||| || |||||| | |||||||||||||||||| ||| Sbjct 1950067 AGGGTGCGACCGTCTTCCAGTTGCTTTCCAGCGAAAATCAAACGTTGTTGGTCGGGAGGA 1950126 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| ||| || ||| || | || ||||| || | ||| || Sbjct 1950127 ATGCCTTCCTTGTCTTGAATCTTAGACTTAACGTTGTCGATGGTGTCTGAAGATTCGACC 1950186 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTAC 15351 || | ||| ||||| || || || ||||| || || Sbjct 1950187 TCAAGGGTGATGGTCTTTCCGGTAAGAGTCTTAAC 1950221 >seq17 Length=875485 Score = 89.7 bits (98), Expect = 4e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 15176 TTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATC 15235 ||||| ||||||||||| ||| | | ||||||| ||||| || |||||| | ||| Sbjct 658243 TTTTGGATGTTGTAATCTGAGAGAGTACGTCCGTCTTCCAATTGCTTTCCAGCGAAGATC 658184 Query 15236 AAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCT 15295 ||||||||||| ||| |||||||| || ||||| || ||| ||| ||| | || Sbjct 658183 AAACGTTGTTGATCGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 658124 Query 15296 ATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAA 15354 ||||| ||| || || || | ||| ||||| || || || || || || || || Sbjct 658123 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 658065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362177319610866