Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq3 107 1e-18 >seq3 Length=2676204 Score = 107 bits (118), Expect = 1e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT--CATCG 43969 |||||| || | ||||| || ||||||||||| ||||| || | || | || Sbjct 1949568 CACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCG--AAAGGGTTCTGCCGTCC 1949625 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 |||||||| ||||||||||| ||||| ||||| || || | || | || || || || Sbjct 1949626 TCCAATTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCCTCCTTGTCC 1949685 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| ||| ||| || || ||| ||||||| || ||||| || | ||||| || Sbjct 1949686 TGAATCTTTGATTTTACATTATCAATGGTATCTGACGATTCCACCTCTAATGTAATGGTC 1949745 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || |||||||| ||||| |||||||| Sbjct 1949746 TTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1949777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354775758039048