Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq18 105 6e-18 seq3 91.5 1e-13 >seq18 Length=865119 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 || ||||||||||| | ||| || |||||||| | ||| |||||| | ||| | | Sbjct 543461 CGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGGCCA 543402 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || || || |||||| | ||||| |||| || || || || ||||| || || ||| Sbjct 543401 TCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCCTTG 543342 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | |||||| | ||| ||||| | || || || | |||||| Sbjct 543341 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATG 543282 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||||| || || || || || || |||||||||||| Sbjct 543281 GTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 543246 >seq3 Length=2676204 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 ||||| || ||||| ||||||||||| | ||| ||||| | ||||| || ||||| Sbjct 1949797 ACCAAATGTAAAGTCGATTCCTTTTGAATGTTGTAATCCG--AAAGTGTACGACCATCCT 1949854 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | || || || || ||||||| | | ||| ||||| || || ||||| || || || | Sbjct 1949855 CAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCGGGTGGGATACCCTCCTTATCTT 1949914 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || |||| ||| || | ||| || || | || || || | ||||| || | Sbjct 1949915 GGATCTTTGACTTCACATTGTCGATGGTATCCGATGATTCAACCTCCAAAGTGATTGTCT 1949974 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| ||||| || || || ||||||||||| Sbjct 1949975 TTCCGGTAAGGGTCTTGACGAAGATCTGCAT 1950005 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||||||||| || ||||||||| | || ||||| | || || ||||| Sbjct 1949568 CACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCGAAAGGGTTCTGCCGTCCTC 1949627 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || || ||||| ||||||| |||| ||| ||||| || ||||| || || ||||| | Sbjct 1949628 CAATTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCCTCCTTGTCCTG 1949687 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| |||| || || | | || || | || || || | || ||||| || Sbjct 1949688 AATCTTTGATTTTACATTATCAATGGTATCTGACGATTCCACCTCTAATGTAATGGTCTT 1949747 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | ||| || |||||||| ||||| Sbjct 1949748 GCCAGTCAAAGTCTTGACAAAGATTTGCAT 1949777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448288812849360