Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq38 223 4e-53 seq35 174 2e-38 >seq38 Length=269250 Score = 223 bits (246), Expect = 4e-53 Identities = 1301/2063 (63%), Gaps = 45/2063 (2%) Strand=Plus/Minus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 ||||||||||| || || || || | | ||||||| |||||||||||| || || | | Sbjct 57127 GTGAATTGAATAGGTGCTGAGGCAGCCATAGTACGTAAATAGTACATTCCGGTCTTCAAA 57068 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || | |||| || ||||||||| || | ||| | ||||| || Sbjct 57067 CCCAATTTCCAACCAGCAAAATGCATGGATGTAATCTTGCCCATTGTAGGATCCTTCATG 57008 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 || || ||||| |||||| |||||| ||||| || || | || |||||||||| | Sbjct 57007 TGAATGTTCATTGATTGAGATTGATCAATGAATGCACCACGATCAGCAGCCATTTGAACA 56948 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234 || || ||| | |||||||||| ||| || |||| ||| || || |||||| Sbjct 56947 ATTGTTCGTTGGGAGATTTCCCAAACAGTCTTGTAAAGAGCCTTGATGTCAGCTGGAATA 56888 Query 62235 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291 || | |||| ||||||||||||||||| || || || | ||||| || | ||| | Sbjct 56887 TTGGGGATATTTTGAATGGATCCACCATCAGCAATGATACGGTTCTTCATATTGTCAGAC 56828 Query 62292 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62351 || | | ||| | | | || || |||||||| ||||| |||||||| Sbjct 56827 CAGAGACCCATATCGACAAGGTCCTTGAGAAGCCATGGATTAACGACTTGGAATTCTCCG 56768 Query 62352 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62411 | | || | |||| ||| || || || || ||||| | | || || || Sbjct 56767 GCAAGAACACGACGAGAGTAGATGTTTGAAGTGTAAGGTTCGAAACATTCGTTGAAGCCA 56708 Query 62412 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62471 | |||||| | || ||||| ||||||||||| || | | | || | | ||| Sbjct 56707 AGAATTTGGGATGTGCTAGCAGTAGGCATAGGTGCAACTAGGAGAGAGTTGCGGATTCCG 56648 Query 62472 TATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNN 62531 | | |||| | || | || ||||||| ||| | ||| | ||| ||| Sbjct 56647 TGTTGCTTGATGGATTGCTTCAAAGAGTCCCAATCCCACAAATCAGTAGGTGTAACCCCC 56588 Query 62532 NNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGT 62591 ||| || ||| ||| | | || ||| ||| || |||||||| Sbjct 56587 CACATATCGTATTGAAGTTCACCCTTAGAGACTGGGGAGCCTTGATAGGTTTCGTATGGG 56528 Query 62592 CC---TTCCTTCTC-AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 62647 || |||||| | | || | | || | | || ||| ||| || ||||| || Sbjct 56527 CCAAGTTCCTTTGCGATCTCGA-CGGAAGAGGTC---AAGGCAGCGTGGTAGATGGTCTC 56472 Query 62648 GAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG--A 62705 ||| || | | || || | || ||||| | ||||||||| | ||||| | Sbjct 56471 GAAAATTTGTATGTTGAGGTGTTTGGCTTCTGGAGAGTCAAATGGAAGACG-AAGAGCCA 56413 Query 62706 ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 62765 | ||| || || || | ||||||||||||| | ||||||||| ||| | ||| | Sbjct 56412 AGAAA-GCATCAGCAAGACCTTGAACACCAACAGCGATAGGTCGATGACGGAAATT-GCT 56355 Query 62766 ATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 62824 |||| | | |||| | ||||| || || || || ||||| ||||| | ||||| || Sbjct 56354 TTTTCGGGCCTCTGCGACTGGATAGTAGTTGATGTCAATAATCTTATTCAAGTTTCTAAC 56295 Query 62825 AATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTATT---AC 62878 || |||| ||| || || | || || | |||||| | || | ||| || || Sbjct 56294 AACAACTTGGACAACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCATTCATGTTGAC 56235 Query 62879 -AAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 62937 ||| || | ||| | | || |||| ||||| || ||||||| | | | | Sbjct 56234 GAAAGTTGGTAAAG-CGATGGAAGCCAAGTTACAGCAAGCAACCTCATCTGGTGCAGAGT 56176 Query 62938 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTAC 62997 | | | || || ||||| | ||| | ||||| || | || | ||| || | Sbjct 56175 ACTCAACGATTTCTGTGCACAAATTGGAGCTGCGAATAGTACCCAGGTTCTTTTGGTTGC 56116 Query 62998 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 63057 |||| ||||| || |||||||| ||||| ||||| ||| | || || || | |||| | Sbjct 56115 TCTTCTTGTTGCATGCATCCTTGTAAAGCATGAAGGGATTTCCGGTCTCGGTTTGAGCCT 56056 Query 63058 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTC--- 63114 | | ||| | | ||| | | ||||||| || || ||| | | | || Sbjct 56055 CAAGAATGGAGTACCAAAGTTTTTGAGCCTTGAT---AGTCTTGCGACCCTTGCCTGCCT 55999 Query 63115 TTTCGTATAGT--GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGG 63172 ||||||| ||| | | | |||||||| || || |||||| | || || || Sbjct 55998 TTTCGTAACCCTCGTAGAGAGCC--TCGAACTCCTCGCCATAAACATCTGCTAAACCTGG 55941 Query 63173 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 63232 |||||| | || ||||| | | ||| || || | | | || || ||||| || || Sbjct 55940 ACATTCGTTGGGGCACATGAGAGTCCAATCCCCATTCTTTTCAACACGCTTCATGAATAG 55881 Query 63233 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 63292 |||||||||||| | || || ||||| | | | | ||| || || || ||| Sbjct 55880 ATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCACGAACTTCTTCTTTGCCATGATT 55821 Query 63293 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63352 || ||||| |||||| | | || ||| | |||||| || || | ||| | || | Sbjct 55820 TTTGCGTAGATCAAGGAACTCAAAAACATCCGCATGCCATGGCTCAAGGTAAACAGCAAA 55761 Query 63353 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63412 | ||||| || || || || || ||||| | ||||| || ||||| || |||||| Sbjct 55760 GGCACCAGGACGCTTATTACCACCTTGATCAACATATCTGGCAGTGTTGTTGAAAACTCG 55701 Query 63413 CAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGC 63472 | ||| |||| |||||||| || | || |||||||||| || || ||| | || Sbjct 55700 GAGCATAGGAACGATACCGTTAGAGTTTCCGTTGGTACCGGCAATGTATGCGCCAGTAGC 55641 Query 63473 ACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63531 ||| || | | | || | ||||| || || || || | || ||||| | || || Sbjct 55640 ACGGAT-TCGGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATAGCACAAA 55582 Query 63532 GTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGC 63591 || || || || || ||||| || || || || || |||||| | || || || Sbjct 55581 TCTTCAAAGTATCGTAAATACCATCAATACTGTCCTCCTTCATGTCGATAAGGAAGCATG 55522 Query 63592 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 63651 || | ||| | ||| |||||| || | || || || || || || || Sbjct 55521 ATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGTGTTGGCGAGGCATGTGTGAAGT 55462 Query 63652 ATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATT 63710 | || | || | | ||||| || || ||||| || ||||| || | ||||| Sbjct 55461 ACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCAATATCATCACCG-TGAATA 55403 Query 63711 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63770 || || || |||||||| | ||| || || || | ||| | | ||| | | Sbjct 55402 CCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACTTTGCCATCAAGACGT 55343 Query 63771 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTT 63828 | | ||| || || | |||||| || ||||| || | || ||||| ||||| | Sbjct 55342 AGAAGGTATGAACGCTCGAGAGTTTTGAATCCAAAGTATTGATAGTTGAAA--TCTCGGT 55285 Query 63829 CGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATAC 63888 |||| | ||| | || ||||||| |||| || | | |||| || | || | | Sbjct 55284 CGTAGACAATGGCAGAATTGAGTTCCTCCTCATGTCTCATAACACATTCGAAAGT-TTCC 55226 Query 63889 TTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCC 63947 ||| ||| || ||||| | | |||||| | || || ||| | | ||||||| Sbjct 55225 TTGCTAATCATAGGAGATGCTGTGCCATTTCTGGGGTTTGTATACTGGTATAAATCGCGA 55166 Query 63948 ATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCG 64007 || || | || |||| || |||| ||||| || || || || || || | || Sbjct 55165 ATAACGTGCGAGAACTGTTTCTTGGTTTGTTTGTGGAGGTTGGAGACTGCAATACGAGCA 55106 Query 64008 GCTAGAATGGCATAATCCGGATG 64030 ||||||||||||||||| ||||| Sbjct 55105 GCTAGAATGGCATAATCGGGATG 55083 >seq35 Length=307329 Score = 174 bits (192), Expect = 2e-38 Identities = 575/902 (64%), Gaps = 63/902 (7%) Strand=Plus/Minus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 |||||||| ||||| || | |||||||| || ||||| || || |||| || || || Sbjct 74560 TTTTGGTAATCACCAACTCTCTTTTCGAAGAAGTTAGTCTTGCCGGCCAAGGAAATGTTC 74501 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 |||||||| ||||| || |||| | || || | ||| | ||||| | | Sbjct 74500 TCCATGAAGTCAAATGGGTTGGCAGACTTGTAGACTTTGTCGTTACCCAAAGCGATGAGG 74441 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 | | ||| || |||||||| || ||| ||||| | | ||||| || | ||| Sbjct 74440 AGACGATCAGCAACGAATTCGATGTATTGCTTCATGAGGGTGGAGTTCATGCCCAAAAGA 74381 Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252 | ||||||||| | || | |||||||| ||||| | || || || || |||| Sbjct 74380 GCACAAGGAAGAGCCTCGGTCAAGAATTCTTGCTCAATTGCGACGGCCTCGGTGATAACG 74321 Query 33253 GATCTAACGGTTT-CTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 33311 | |||| || ||| | || || ||| | ||| || | | |||||||| Sbjct 74320 TCTTGGACGGCTTGCTTGGATGGGCGG-TGCTTGAGATGGGAGAAGAGGAGGCATGCGAA 74262 Query 33312 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 33371 |||| ||| ||||| ||||| | || ||||||||||| || |||||||||| ||| Sbjct 74261 ATCGGTGTGGAGACCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCGGCCAT 74202 Query 33372 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTC 33431 || |||||||| || ||||| || || || ||||| ||||| || |||||||| ||||| Sbjct 74201 AAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGATCCGGAGAAGAAGATGCCTTC 74142 Query 33432 TACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG---CTGTCATGTATCCACTT 33488 || ||||| || || | ||| | | || | || | | || || ||||| || Sbjct 74141 AACGGCAGCGAATGCGACAAGACGTTGAGCAAAGGTGGAGTTCTTATCTTGAATCCATTT 74082 Query 33489 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA------------------------- 33523 |||||| ||||||||||| || | ||||| | Sbjct 74081 GACAGCCCAGTCGGCCTTCTTCTTGATGCAAGGAACTATCAAGGTTGTTAGTTGAATTCA 74022 Query 33524 --------------------------TCGTTTCTATGGCATTAAAGAGATA-Gt-ttttt 33555 | || || || ||||| ||||| || || |||| Sbjct 74021 TGTAACAATGTATGATTGTAACCTACTGGTATCAATAGCATTGAAGAGGTATGTCTTTTG 73962 Query 33556 tCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTT 33615 | || | || || | ||| || ||||| | |||| || |||| || |||||||| Sbjct 73961 TGCTTGC--TCCTTGATATATGTGTCGATGAGAAGAGAGTATGTTTCGGAGTGAATGTTC 73904 Query 33616 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAA 33675 || || || || || |||||||| |||| ||||| | ||||| ||||| || Sbjct 73903 TCCATCATGATTTGGAAACCGTAGAAGCATCGTGCCTCTGGGATCTGAACTTCACCACTG 73844 Query 33676 AATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 33735 ||||| || |||| || || || || |||||||| || || || || || | || Sbjct 73843 AATCGCTCAACCAAGTTCTCGTTGACAATTCCGTCTGATGCGGCGAAGAATGCGAGAACG 73784 Query 33736 TGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTATTCCAATCATTGATATCTTTA 33792 || || || || ||||| | ||| || ||||| || | || ||| || Sbjct 73783 TGGGAGATGAAGTAACGCTCGTCATCATTGAGTCTGTTGTTCCAGTCGTGGAGATCCTTT 73724 Query 33793 GATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAG 33852 || | ||| | ||||| | ||||| || ||||||||||| ||||| ||||| | |||| Sbjct 73723 GACAAATCAATCTCTTCTGCGGTCCAGAAAGATGCCTCTGCTTTTTTGTACATCTGCCAG 73664 Query 33853 AT 33854 || Sbjct 73663 AT 73662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622943882806160