Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq18 109 5e-19 seq3 102 7e-17 >seq18 Length=865119 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || ||| | || ||| |||| || ||| | | Sbjct 543247 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCC 543306 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || || || || ||||| ||| Sbjct 543307 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCCGACCAA 543366 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| || |||| | || ||| |||||||||||||||| | | | | | |||||| ||| Sbjct 543367 CAGCGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTTTCCGATTACAAC 543426 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 || ||||| || || || |||| || |||||| Sbjct 543427 ATCCAAAAGGAGTCCACTCTTCACTTGGTGTTA 543459 >seq3 Length=2676204 Score = 102 bits (112), Expect = 7e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086 |||||| |||| || ||| ||| |||||||||||| | ||||| ||||| ||| Sbjct 1950480 ATTACCCTCGAGGTTGAGTCCAGCGACACCATCGACAATGTCAAGTCCAAGATCCAGGAC 1950421 Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146 || || || || |||||||| |||||| | |||||| || ||| || ||||| |||||| Sbjct 1950420 AAGGAGGGAATTCCTCCCGACCAACAGCGTTTGATTTTCGCCGGAAAACAACTTGAAGAT 1950361 Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 | | | | | || || || ||||| || ||||| ||||| Sbjct 1950360 GGTCGCACCTTGAGTGACTACAACATCCAGAAAGAGTCTAC 1950320 Score = 82.4 bits (90), Expect = 7e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 || ||||| | || ||| | || ||||| | ||||||||||| | || || Sbjct 1950209 ACCGGAAAGACCATCACCCTTGAGGTCGAATCTTCAGACACCATCGACAACGTTAAGTCT 1950150 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 |||||| ||||| |||||||| |||||||| ||||| | |||||| || || ||| Sbjct 1950149 AAGATTCAAGACAAGGAAGGCATTCCTCCCGACCAACAACGTTTGATTTTCGCTGGAAAG 1950090 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194 ||||| ||||| | | | | | ||||||||| || || || || ||||| |||| Sbjct 1950089 CAACTGGAAGACGGTCGCACCCTTTCCGATTATAATATCCAGAAGGAGTCTACCCTTCAC 1950030 Query 24195 TTAGT 24199 || || Sbjct 1950029 TTGGT 1950025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429933767826030