Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq352 140 2e-28
seq3 118 7e-22
>seq352
Length=352
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 162 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 103
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 102 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 68
>seq3
Length=2676204
Score = 118 bits (130), Expect = 7e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | | ||| | |||||| || | ||||| |||||||||||||||||||| ||
Sbjct 1949550 ACCACCACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCGA 1949609
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
| | |||| || ||||| ||||| ||||| || | ||||||||||| | ||
Sbjct 1949610 AAGGGTTCTGCCGTCCTCCAATTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGTGG 1949669
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| ||| || |||||| ||| ||| || ||||| | | |||||| ||| ||
Sbjct 1949670 AATGCCCTCCTTGTCCTGAATCTTTGATTTTACATTATCAATGGTATCTGACGATTCCAC 1949729
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||||||||| || || || ||||| || || || || || |||||
Sbjct 1949730 CTCTAATGTAATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1949777
Score = 102 bits (112), Expect = 5e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | | ||| | |||||||| | ||| ||||||||||| |||||||| |
Sbjct 1949777 TACCACCACGGAGACGAAGGACCAAATGTAAAGTCGATTCCTTTTGAATGTTGTAATCCG 1949836
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | ||| | || || | ||| || || ||||| || || ||||||||||||| |
Sbjct 1949837 AAAGTGTACGACCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCGGGTG 1949896
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| || || || || || ||| ||||||||| | || ||||| |||||
Sbjct 1949897 GGATACCCTCCTTATCTTGGATCTTTGACTTCACATTGTCGATGGTATCCGATGATTCAA 1949956
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || || || || || || || || | ||| || ||||| ||||||||
Sbjct 1949957 CCTCCAAAGTGATTGTCTTTCCGGTAAGGGTCTTGACGAAGATCTGCAT 1950005
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334945460996006
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |