Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq38 235 7e-57 seq35 154 2e-32 >seq38 Length=269250 Score = 235 bits (260), Expect = 7e-57 Identities = 1306/2064 (63%), Gaps = 47/2064 (2%) Strand=Plus/Minus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 ||||||||||| || || || || | | ||||||| |||||||||||| || || | | Sbjct 57127 GTGAATTGAATAGGTGCTGAGGCAGCCATAGTACGTAAATAGTACATTCCGGTCTTCAAA 57068 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || | |||| || ||||||||| || | ||| | ||||| || Sbjct 57067 CCCAATTTCCAACCAGCAAAATGCATGGATGTAATCTTGCCCATTGTAGGATCCTTCATG 57008 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 || || ||||| |||||| |||||| ||||| || || | || |||||||||| | | Sbjct 57007 TGAATGTTCATTGATTGAGATTGATCAATGAATGCACCACGATCAGCAGCCATTTGAACA 56948 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62089 || || ||| | |||||||||| ||| || |||| ||| || || |||||| Sbjct 56947 ATTGTTCGTTGGGAGATTTCCCAAACAGTCTTGTAAAGAGCCTTGATGTCAGCTGGAATA 56888 Query 62090 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62146 || | |||| ||||||||||||||||| || || || | ||||| || | ||| | Sbjct 56887 TTGGGGATATTTTGAATGGATCCACCATCAGCAATGATACGGTTCTTCATATTGTCAGAC 56828 Query 62147 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62206 || | | ||| | | | || || |||||||| ||||| |||||||| Sbjct 56827 CAGAGACCCATATCGACAAGGTCCTTGAGAAGCCATGGATTAACGACTTGGAATTCTCCG 56768 Query 62207 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 62266 | | || | |||| ||| || || || || ||||| | | | || || || Sbjct 56767 GCAAGAACACGACGAGAGTAGATGTTTGAAGTGTAAGGTTCGAAACATTCGTTGAAGCCA 56708 Query 62267 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62326 | |||||| | || ||||| ||||||||||| || | | | || | | ||| Sbjct 56707 AGAATTTGGGATGTGCTAGCAGTAGGCATAGGTGCAACTAGGAGAGAGTTGCGGATTCCG 56648 Query 62327 TATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNN 62386 | | |||| | || | || ||||||| ||| | ||| | ||| ||| Sbjct 56647 TGTTGCTTGATGGATTGCTTCAAAGAGTCCCAATCCCACAAATCAGTAGGTGTAACCCCC 56588 Query 62387 NNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGT 62446 ||| || ||| ||| | | || ||| ||| || |||||||| Sbjct 56587 CACATATCGTATTGAAGTTCACCCTTAGAGACTGGGGAGCCTTGATAGGTTTCGTATGGG 56528 Query 62447 CC---TTCCTTCTC-AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 62502 || |||||| | | || | | || | | || ||| ||| || ||||| || Sbjct 56527 CCAAGTTCCTTTGCGATCTCG-ACGGAAGAGGTC---AAGGCAGCGTGGTAGATGGTCTC 56472 Query 62503 GAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAG--A 62560 ||| || | | || || | || ||||| | ||||||||| | ||||| | Sbjct 56471 GAAAATTTGTATGTTGAGGTGTTTGGCTTCTGGAGAGTCAAATGGA-AGACGAAGAGCCA 56413 Query 62561 ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 62620 | ||| || || || | ||||||||||||| | ||||||||| ||| | ||| | Sbjct 56412 AGAAA-GCATCAGCAAGACCTTGAACACCAACAGCGATAGGTCGATGACGGAAATT-GCT 56355 Query 62621 ATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 62679 |||| || |||| | ||||| || || || || ||||| ||||| | ||||| || Sbjct 56354 TTTTCGGGCCTCTGCGACTGGATAGTAGTTGATGTCAATAATCTTATTCAAGTTTCTAAC 56295 Query 62680 AATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTA---TTAC 62733 || |||| ||| || || | || || | |||||| | || | ||| | | || Sbjct 56294 AACAACTTGGACAACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCATTCATGTTGAC 56235 Query 62734 -AAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 62792 ||| || | || || | || |||| ||||| || ||||||| | | | | Sbjct 56234 GAAAGTTGGT-AAAGCGATGGAAGCCAAGTTACAGCAAGCAACCTCATCTGGTGCAGAGT 56176 Query 62793 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 62852 | | | || || ||||| | ||| | || || || | || | ||| || | Sbjct 56175 ACTCAACGATTTCTGTGCACAAATTGGAGCTGCGAATAGTACCCAGGTTCTTTTGGTTGC 56116 Query 62853 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 62912 |||| ||||| || |||||||| ||||| ||||| ||| | || || || | |||| | Sbjct 56115 TCTTCTTGTTGCATGCATCCTTGTAAAGCATGAAGGGATTTCCGGTCTCGGTTTGAGCCT 56056 Query 62913 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTT---TTCTC 62969 | | ||| | | ||| | | |||||| | |||| ||| | ||| | | Sbjct 56055 CAAGAATGGAGTACCAAAGTTTTTGAGCCT---TGATAGTCTTGCGACCCTTGCCTGCCT 55999 Query 62970 TTTCGTA--TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGG 63027 ||||||| ||| | | | |||||||| || || |||||| | | || || Sbjct 55998 TTTCGTAACCCTCGTAGAGAGCC--TCGAACTCCTCGCCATAAACATCTGCTAAACCTGG 55941 Query 63028 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 63087 |||||| | || ||||| | | ||| || || | | | || || ||||| || || Sbjct 55940 ACATTCGTTGGGGCACATGAGAGTCCAATCCCCATTCTTTTCAACACGCTTCATGAATAG 55881 Query 63088 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 63147 |||||||||||| | || || ||||| | | | | ||| || || || ||| Sbjct 55880 ATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCACGAACTTCTTCTTTGCCATGATT 55821 Query 63148 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63207 || ||||| |||||| | | || ||| | |||||| || || | ||| | || | Sbjct 55820 TTTGCGTAGATCAAGGAACTCAAAAACATCCGCATGCCATGGCTCAAGGTAAACAGCAAA 55761 Query 63208 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63267 | ||||| || || || || || ||||| | ||||| || ||||| || |||||| Sbjct 55760 GGCACCAGGACGCTTATTACCACCTTGATCAACATATCTGGCAGTGTTGTTGAAAACTCG 55701 Query 63268 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGC 63327 | ||| |||| ||||| || || | || ||||| || | || || ||| | || Sbjct 55700 GAGCATAGGAACGATACCGTTAGAGTTTCCGTTGGTACCGGCAATGTATGCGCCAGTAGC 55641 Query 63328 ACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63386 ||| || | | | || | ||||| || || || || | || ||||| | || || Sbjct 55640 ACGGAT-TCGGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATAGCACAAA 55582 Query 63387 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 63446 || || ||||| || || || || ||||| || ||| |||||| | || || || Sbjct 55581 TCTTCAAAGTATCGTAAATACCATCAATACTGTCCTCCTTCATGTCGATAAGGAAGCATG 55522 Query 63447 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACC 63506 || | ||| | ||| |||||| || | || || || || || || || Sbjct 55521 ATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGTGTTGGCGAGGCATGTGTGAAGT 55462 Query 63507 ATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATT 63565 | || | || | | ||||| || || ||||| || ||||| || | ||||| Sbjct 55461 ACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCAATATCATCACCG-TGAATA 55403 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63625 || || || |||||||| | ||| || || || | ||| | | ||| | | Sbjct 55402 CCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACTTTGCCATCAAGACGT 55343 Query 63626 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTT 63683 | | ||| || || | |||||| || ||||| || | || ||||| ||||| | Sbjct 55342 AGAAGGTATGAACGCTCGAGAGTTTTGAATCCAAAGTATTGATAGTTGAAA--TCTCGGT 55285 Query 63684 CGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACA-TCCATGGTAATA 63742 |||| | ||| | || ||||||| |||| || | | |||| ||| || | || | Sbjct 55284 CGTAGACAATGGCAGAATTGAGTTCCTCCTCATGTCTCATAAC-ACATTCGAAAGT-TTC 55227 Query 63743 CTTG-AAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTC 63801 |||| ||| |||||| | | | |||||| | || || ||| | | ||||||| Sbjct 55226 CTTGCTAATCATAGGAGATGCTGTGCCATTTCTGGGGTTTGTATACTGGTATAAATCGCG 55167 Query 63802 CATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGC 63861 || || | || |||| || |||| |||||| || || || || || || | ||| Sbjct 55166 AATAACGTGCGAGAACTGTTTCTTGGTTTGTTTGTGGAGGTTGGAGACTGCAATACGAGC 55107 Query 63862 GGCTAGAATGGCATAATCCGGATG 63885 ||||||||||||||||| ||||| Sbjct 55106 AGCTAGAATGGCATAATCGGGATG 55083 >seq35 Length=307329 Score = 154 bits (170), Expect = 2e-32 Identities = 573/904 (63%), Gaps = 67/904 (7%) Strand=Plus/Minus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 |||||||| ||||| || | |||||||| || ||||| || || | || || || || Sbjct 74560 TTTTGGTAATCACCAACTCTCTTTTCGAAGAAGTTAGTCTTGCCGGCCAAGGAAATGTTC 74501 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 |||||||| || ||||| |||| | || || | ||| | ||||| | | Sbjct 74500 TCCATGAAGTCAAATGGGTTGGCAGACTTGTAGACTTTGTCGTTACCCAAAGCGATGAGG 74441 Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 | | ||| || || ||||| || ||| ||||| | | ||||| || | ||| Sbjct 74440 AGACGATCAGCAACGAATTCGATGTATTGCTTCATGAGGGTGGAGTTCATGCCCAAAAGA 74381 Query 32550 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 32609 | ||||||||| | || | |||||||| ||||| | ||| || || || |||| Sbjct 74380 GCACAAGGAAGAGCCTCGGTCAAGAATTCTTGCTCAATTGCGACGGCCTCGGTGATAACG 74321 Query 32610 GATCTT--ACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 32666 |||| || | || ||| | || || | | | ||| || | | |||||| Sbjct 74320 --TCTTGGACGGCTTGCTTGGATGGGCGG-TGCTTGAGATGGGAGAAGAGGAGGCATGCG 74264 Query 32667 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 32726 |||||| ||| ||||| ||||| | || | ||||||||| || |||||||||| | Sbjct 74263 AAATCGGTGTGGAGACCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCGGCC 74204 Query 32727 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 32786 || || |||||||| || ||||| || || || || || ||||| || ||||| || ||| Sbjct 74203 ATAAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGATCCGGAGAAGAAGATGCCT 74144 Query 32787 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG---CTGTCATGTATCCAC 32843 || || || || || || | ||| | | || | || | | || || ||||| Sbjct 74143 TCAACGGCAGCGAATGCGACAAGACGTTGAGCAAAGGTGGAGTTCTTATCTTGAATCCAT 74084 Query 32844 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA----------------------- 32880 || |||||| ||||||||||| || | ||||| | Sbjct 74083 TTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGGAACTATCAAGGTTGTTAGTTGAATT 74024 Query 32881 ----------------------------TTGTCTCTATAGCATTAAAGAGATA-Gt-ttt 32910 | || || |||||||| ||||| || || ||| Sbjct 74023 CATGTAACAATGTATGATTGTAACCTACTGGTATCAATAGCATTGAAGAGGTATGTCTTT 73964 Query 32911 tttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 32970 | | || | || || | |||||| || || | |||| || |||| || ||||||| Sbjct 73963 TGTGCTTGC--TCCTTGATATATGTGTCGATGAGAAGAGAGTATGTTTCGGAGTGAATGT 73906 Query 32971 TTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTAC 33030 | || || ||||| || ||||||||||||| ||||| | ||||| ||||| || Sbjct 73905 TCTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCCTCTGGGATCTGAACTTCACCAC 73846 Query 33031 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 33090 ||||| || | || || || || || |||||||| || || || || || | | Sbjct 73845 TGAATCGCTCAACCAAGTTCTCGTTGACAATTCCGTCTGATGCGGCGAAGAATGCGAGAA 73786 Query 33091 CATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTATTCCAATCATTGATATCTT 33147 | || || || || ||||| | ||| || ||||| || | || ||| | Sbjct 73785 CGTGGGAGATGAAGTAACGCTCGTCATCATTGAGTCTGTTGTTCCAGTCGTGGAGATCCT 73726 Query 33148 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 33207 | || | ||| | ||||| | ||||| || ||||||||||| ||||| ||||| | || Sbjct 73725 TTGACAAATCAATCTCTTCTGCGGTCCAGAAAGATGCCTCTGCTTTTTTGTACATCTGCC 73666 Query 33208 AGAT 33211 |||| Sbjct 73665 AGAT 73662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633628625909600