Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq18 122 8e-23 seq3 109 5e-19 >seq18 Length=865119 Score = 122 bits (134), Expect = 8e-23 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || ||| ||||||| |||| || ||||| || Sbjct 543247 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCC 543306 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| || ||| ||||| || || |||||||| |||| Sbjct 543307 GACACCATCGA--CAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCCGACC 543364 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| | || || ||||| || ||| | ||||||| ||||| | |||||||| Sbjct 543365 AACAGCGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTTTCCGATTACA 543424 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 | || ||||| || ||||| || || || ||| || Sbjct 543425 ACATCCAAAAGGAGTCCACTCTTCACTTGGTGTTA 543459 >seq3 Length=2676204 Score = 109 bits (120), Expect = 5e-19 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||||||||| || || |||| ||| | || ||||| ||||| Sbjct 1949777 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACCATTACATTAGAGGTGGAATCGTCA 1949718 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || | || || |||| | ||| ||||| || || ||||||||||| Sbjct 1949717 GATACCATTGA--TAATGTAAAATCAAAGATTCA-GGACAAGGAGGGCATTCCACCTGAT 1949661 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | || ||||| || || ||||| || || | | || | |||||| Sbjct 1949660 CAACAACGATTGATCTTTGCAGGAAAGCAATTGGAGGACGGCAGAACCCTTTCGGATTAC 1949601 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||||| ||| ||| | || || ||||| Sbjct 1949600 AATATTCAAAAGGAAAGCACCTTGCACTTGGTGCT 1949566 Score = 104 bits (114), Expect = 2e-17 Identities = 143/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 25021 TGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG--AA 25078 |||||||||| | || || |||| || ||||| ||||| ||||| || || || Sbjct 1950494 TGACCGGTAAGACTATTACCCTCGAGGTTGAGTCCAGCGACACCATCGA--CAATGTCAA 1950437 Query 25079 GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGG 25138 | || ||| ||||| || || ||||| || ||||||||||| | ||||| ||||| Sbjct 1950436 GTCCAAGATCCAGGACAAGGAGGGAATTCCTCCCGACCAACAGCGTTTGATTTTCGCCGG 1950377 Query 25139 CAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCT 25198 |||||| | ||||||| |||||| || | || ||||| || || ||||| || || || Sbjct 1950376 AAAACAACTTGAAGATGGTCGCACCTTGAGTGACTACAACATCCAGAAAGAGTCTACTCT 1950317 Query 25199 ACATTTAGTGCTAAGGCT 25216 || || || || || || Sbjct 1950316 CCACTTGGTCCTCAGACT 1950299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433325750215190