Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq18 122 8e-23
seq3 109 5e-19
>seq18
Length=865119
Score = 122 bits (134), Expect = 8e-23
Identities = 157/215 (73%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | || || ||| ||||||| |||| || ||||| ||
Sbjct 543247 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCC 543306
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| ||||| || || ||| || ||| ||||| || || |||||||| ||||
Sbjct 543307 GACACCATCGA--CAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCCGACC 543364
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
||||||| | || || ||||| || ||| | ||||||| ||||| | ||||||||
Sbjct 543365 AACAGCGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTTTCCGATTACA 543424
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211
| || ||||| || ||||| || || || ||| ||
Sbjct 543425 ACATCCAAAAGGAGTCCACTCTTCACTTGGTGTTA 543459
>seq3
Length=2676204
Score = 109 bits (120), Expect = 5e-19
Identities = 155/215 (72%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||||||||| || || |||| ||| | || ||||| |||||
Sbjct 1949777 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACCATTACATTAGAGGTGGAATCGTCA 1949718
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| || || || | || || |||| | ||| ||||| || || |||||||||||
Sbjct 1949717 GATACCATTGA--TAATGTAAAATCAAAGATTCA-GGACAAGGAGGGCATTCCACCTGAT 1949661
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
||||| || | || ||||| || || ||||| || || | | || | ||||||
Sbjct 1949660 CAACAACGATTGATCTTTGCAGGAAAGCAATTGGAGGACGGCAGAACCCTTTCGGATTAC 1949601
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||||||||| ||| ||| | || || |||||
Sbjct 1949600 AATATTCAAAAGGAAAGCACCTTGCACTTGGTGCT 1949566
Score = 104 bits (114), Expect = 2e-17
Identities = 143/198 (72%), Gaps = 4/198 (2%)
Strand=Plus/Minus
Query 25021 TGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG--AA 25078
|||||||||| | || || |||| || ||||| ||||| ||||| || || ||
Sbjct 1950494 TGACCGGTAAGACTATTACCCTCGAGGTTGAGTCCAGCGACACCATCGA--CAATGTCAA 1950437
Query 25079 GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGG 25138
| || ||| ||||| || || ||||| || ||||||||||| | ||||| |||||
Sbjct 1950436 GTCCAAGATCCAGGACAAGGAGGGAATTCCTCCCGACCAACAGCGTTTGATTTTCGCCGG 1950377
Query 25139 CAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCT 25198
|||||| | ||||||| |||||| || | || ||||| || || ||||| || || ||
Sbjct 1950376 AAAACAACTTGAAGATGGTCGCACCTTGAGTGACTACAACATCCAGAAAGAGTCTACTCT 1950317
Query 25199 ACATTTAGTGCTAAGGCT 25216
|| || || || || ||
Sbjct 1950316 CCACTTGGTCCTCAGACT 1950299
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433325750215190
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |