Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq35 114 1e-20 >seq35 Length=307329 Score = 114 bits (126), Expect = 1e-20 Identities = 198/287 (69%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || ||||| ||||| | ||||| || |||| || || | |||||||| |||||| Sbjct 73948 ATATATGTGTCGATGAGAAGAGAGTATGTTTCGGAGTGAATGTTCTCCATCATGATTTGG 73889 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || |||||||| |||| || || | |||||| ||||| | |||| ||| || | Sbjct 73888 AAACCGTAGAAGCATCGTGCCTCTGGGATCTGAACTTCACCACTGAATCGCTCAACCAAG 73829 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || || ||||| || || || ||||| || || || || | | || || || | Sbjct 73828 TTCTCGTTGACAATTCCGTCTGATGCGGCGAAGAATGCGAGAACGTGGGAGATGAAGTAA 73769 Query 93542 TTCTCATCATCTTTAAGC---TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598 ||| ||||| || || || | ||| ||| ||||| ||||| | ||| | ||| Sbjct 73768 CGCTCGTCATCATTGAGTCTGTTGTTCCAGTCGTGGAGATCCTTTGACAAATCAATCTCT 73709 Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 || | ||||| || ||||| ||||||||||||||||| | ||| || Sbjct 73708 TCTGCGGTCCAGAAAGATGCCTCTGCTTTTTTGTACATCTGCCAGAT 73662 Score = 100 bits (110), Expect = 3e-16 Identities = 262/391 (67%), Gaps = 8/391 (2%) Strand=Plus/Minus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 |||||| || ||||| ||||| || ||| | | ||||| || | |||| | || Sbjct 74435 ATCAGCAACGAATTCGATGTATTGCTTCATGAGGGTGGAGTTCATGCCCAAAAGA-GCAC 74377 Query 92986 A-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044 | || ||||| ||||||||||| |||| ||| ||| | ||||| || | | | ||| Sbjct 74376 AAGGAAGAGCCTCGGTCAAGAATTCTTGCTCAATTGCGACGGCCTCGGTGATAACGTCTT 74317 Query 93045 TTACT-CTACTATTTGG-TGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTC 93102 || || | |||| ||| || || || | | | | ||| || || || Sbjct 74316 GGACGGCT--TGCTTGGATGGGCGGTGCTTGAGATGGGAGAAGAGGAGGCATGCGAAATC 74259 Query 93103 GGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAG 93162 ||| || | ||||||||| || || || | || ||| ||| || | || | | || Sbjct 74258 GGTGTGGAGACCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCGGCCATAAG 74199 Query 93163 TCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCAC 93222 || || ||||||||||| || || || || || || || || || || ||||| || Sbjct 74198 ACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGATCCGGAGAAGAAGATGCCTTCAAC 74139 Query 93223 GGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTG-ATCCATTTTA 93281 ||| || ||||| |||| ||||| ||||| | | | ||| | || |||||||| | Sbjct 74138 GGCAGCGAATGCGACAAGACGTTGAGCAAAGGTGGAGTTCTTA-TCTTGAATCCATTTGA 74080 Query 93282 AAGCCCAATCGGCTTTTTTCTTAATACAAGG 93312 |||||| ||||| || ||||| || ||||| Sbjct 74079 CAGCCCAGTCGGCCTTCTTCTTGATGCAAGG 74049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556857834716240