Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq3 123 2e-23 seq18 104 2e-17 seq17 84.2 2e-11 >seq3 Length=2676204 Score = 123 bits (136), Expect = 2e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| ||||| | || || || | ||||| ||||| || |||||||| || Sbjct 1950287 ATACCACCACGAAGTCTGAGGACCAAGTGGAGAGTAGACTCTTTCTGGATGTTGTAGTCA 1950346 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| || ||| ||||||||||||||| || ||| | || | |||||||||||| ||| Sbjct 1950347 CTCAAGGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAAACGCTGTTGGTCGGGA 1950406 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| || | | || | ||||||| |||| || Sbjct 1950407 GGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTGGACTCA 1950466 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCA 114360 || || | ||| | || || ||||||| Sbjct 1950467 ACCTCGAGGGTAATAGTCTTACCGGTCA 1950494 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || ||||||| || ||||| ||||||||||||||||| Sbjct 1949776 ATACCACCACGGAGACGAAGGACCAAATGTAAAGTCGATTCCTTTTGAATGTTGTAATCC 1949835 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||| |||||||| |||||||| |||| ||||| ||||| || || Sbjct 1949836 GAAAGTGTACGACCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCGGGT 1949895 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || |||||| || | | || | ||| || | ||||| Sbjct 1949896 GGGATACCCTCCTTATCTTGGATCTTTGACTTCACATTGTCGATGGTATCCGATGATTCA 1949955 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || ||||| || || || || || |||||||| Sbjct 1949956 ACCTCCAAAGTGATTGTCTTTCCGGTAAGGGTCTTGACGAAGATCTGCAT 1950005 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| ||||| | || || || | ||||| || || || || || |||||| Sbjct 1950004 ATACCACCACGAAGTCTGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATATTATAATCG 1950063 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| ||||| ||||| || |||||| | || | ||| |||||||| ||| Sbjct 1950064 GAAAGGGTGCGACCGTCTTCCAGTTGCTTTCCAGCGAAAATCAAACGTTGTTGGTCGGGA 1950123 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| |||||| || | | || | |||||| | |||||| Sbjct 1950124 GGAATGCCTTCCTTGTCTTGAATCTTAGACTTAACGTTGTCGATGGTGTCTGAAGATTCG 1950183 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370 || || | ||| | || || ||||| ||||| || || Sbjct 1950184 ACCTCAAGGGTGATGGTCTTTCCGGTAAGAGTCTTAAC 1950221 >seq18 Length=865119 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | || || || || | || || || ||||| |||||||||||| Sbjct 543474 ACCACCACGGAGACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGA 543415 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || |||||| ||||| || || ||| |||| | ||||||||||| || || Sbjct 543414 AAGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGG 543355 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| || || ||||| ||||| || | | || | |||||||| || || || Sbjct 543354 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAAC 543295 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || | ||| | |||||||| || || || || || || ||||||||| || Sbjct 543294 CTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGACT 543243 >seq17 Length=875485 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 114195 TTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATG 114254 ||||| ||||||||||| | |||||| ||||| | ||| || |||||| |||| Sbjct 658243 TTTTGGATGTTGTAATCTGAGAGAGTACGTCCGTCTTCCAATTGCTTTCCAGCGAAGATC 658184 Query 114255 AGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCA 114314 | ||| ||||| || |||||||| || || ||||| ||||| || | | || Sbjct 658183 AAACGTTGTTGATCGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 658124 Query 114315 ACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 114373 | |||||||| ||| ||||| || | ||| | || ||||| || || || || || || Sbjct 658123 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 658065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420132218714712