Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq35 219 8e-52
seq38 141 2e-28
>seq35
Length=307329
Score = 219 bits (242), Expect = 8e-52
Identities = 365/516 (71%), Gaps = 11/516 (2%)
Strand=Plus/Plus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGAT-CGAGAGTCCCGACGCAAC 42691
|| ||||||||||||||||| |||||||| |||| ||||| | ||| | || | ||
Sbjct 74049 CCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAAATGGATTCAAGA-TAAGAACTCCAC 74107
Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751
|| | | | || || || || | ||||| || |||||||||||||| || ||||
Sbjct 74108 CTTTGCTCAACGTCTTGTCGCATTCGCTGCCGTTGAAGGCATCTTCTTCTCCGGATCCTT 74167
Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810
|||||| ||||||||||||||| || ||| | ||| |||||||||||||||| ||||
Sbjct 74168 CGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCT-TATGGCCGGACTCACCTTCTCCAACG 74226
Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870
|||||||| | | ||||| || || || | || || || |||||||| ||||| ||
Sbjct 74227 AACTCATCTCCCGTGACGAAGGTCTCCACACCGATTTCGCATGCCTCCTCTTCTC---CC 74283
Query 42871 ACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGA 42930
| |||| |||| || || ||| | |||| | | | ||||| |||||||| | |
Sbjct 74284 ATCTCAAGCACCGCCCATCCAAGCAAGCCGTCCAAGACGTTATCACCGAGGCCGTCGCAA 74343
Query 42931 TCGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGAC 42989
| ||| | || ||| | || || | || || ||| | || | ||||||||| | |
Sbjct 74344 TTGAGCAAGAATTCTTGACCGAGGCTCTTCCTTGTG-CTCTTTTGGGCATGAACTCCACC 74402
Query 42990 CTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAG 43048
|||||| |||| |||||| | | ||| || || | |||||| | ||||| |
Sbjct 74403 CTCATGAAGCAA-TACATCGAATTCGTTGCTGATCGTCTCCTCATCGCTTTGGGTAACGA 74461
Query 43049 CCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAA 43108
| ||||||| | | ||| || ||||| ||||||||||| || |||| |||||
Sbjct 74462 CAAAGTCTACAAGTCTGCCAACCCATTTGACTTCATGGAGAACATTTCCTTGGCCGGCAA 74521
Query 43109 GACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144
||| ||||| ||||| ||| | || | || |||||
Sbjct 74522 GACTAACTTCTTCGAAAAGAGAGTTGGTGATTACCA 74557
>seq38
Length=269250
Score = 141 bits (156), Expect = 2e-28
Identities = 427/647 (66%), Gaps = 17/647 (3%)
Strand=Plus/Minus
Query 244760 ATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAG 244819
|| || ||||||| || || ||| ||| |||||| || |||||||| |||||||||
Sbjct 56140 ATAGTACCCAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAAG 56081
Query 244820 GGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACC 244879
|| ||||||||| || || | || | | || ||| || | ||||||||
Sbjct 56080 GGATTTCCGGTCTCGGTTTGAGCCTCAAGAATGGAGTACCAAAGTTTTTGAGCCTTGATA 56021
Query 244880 GTCCTGCGAGCCTTGCCCTCTGCCT---CGTAGCGGGTGTACAGGGCCTCGAACTCGGGG 244936
||| ||||| ||||||| ||||| |||| | ||| || ||||||||||| |
Sbjct 56020 GTCTTGCGACCCTTGCC---TGCCTTTTCGTAACCCTCGTAGAGAGCCTCGAACTCCTCG 55964
Query 244937 CCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAGACTCCACTCGCCGC 244994
|| | || || ||| || || || || | |||||||||||| |||| || ||
Sbjct 55963 CCATAAACATCTGCTAAACCTGGACATTCGTTG--GGGCACATGAGAGTCCAATCCCCAT 55906
Query 244995 CGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGG 245054
| | || | || |||||| || || || ||||| | ||| | |||||| || | |
Sbjct 55905 TCTTTTCAACACGCTTCATGAATAGATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTG 55846
Query 245055 TCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGT 245114
| || || |||| || || | || || | || ||||| || || | |
Sbjct 55845 CACGAACTTCTTCTTTGCCATGATTTTTGCGTAGATCAAGGAACTCAAAAACATCCGCAT 55786
Query 245115 GCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCA 245174
|||| ||||| | ||| ||||| | ||| || || ||||| || || || || | || ||
Sbjct 55785 GCCATGGCTCAAGGTAAACAGCAAAGGCACCAGGACGCTTATTACCACCTTGAT-CAACA 55727
Query 245175 TCCTCTCG-AGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTT 245232
| ||| | || | |||||| | || || |||| || || |||||||||| |||||
Sbjct 55726 T-ATCTGGCAGTGTTGTTGAAAACTCGGAGCATAGGAACGATACCGTTAGAGTTTCCGTT 55668
Query 245233 GGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTG-ATGGACATGCCTAGTCCGC 245291
||| || ||||| ||||| | | | || | | || ||| | || | || |
Sbjct 55667 GGTACCGGCAATGTATGCGCCAGTAGCACGGA-TTCGGTGAATGTTGAGACCAATACCAC 55609
Query 245292 CGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGT 245351
|||| | ||| ||||| | || || |||| | || || || || || || ||||
Sbjct 55608 CGGCATTCTTTGAGATCATAGCACAAATCTTCAAAGTATCGTAAATACCATCAATACTGT 55549
Query 245352 CCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGG 245398
|| |||||||| || || ||||| || || || | | ||||| ||
Sbjct 55548 CCTCCTTCATGTCGATAAGGAAGCATGATGAAAG-TTGTGCTTGTGG 55503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944334171393760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |