Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq35 219 8e-52 seq38 141 2e-28 >seq35 Length=307329 Score = 219 bits (242), Expect = 8e-52 Identities = 365/516 (71%), Gaps = 11/516 (2%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGAT-CGAGAGTCCCGACGCAAC 42691 || ||||||||||||||||| |||||||| |||| ||||| | ||| | || | || Sbjct 74049 CCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAAATGGATTCAAGA-TAAGAACTCCAC 74107 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 || | | | || || || || | ||||| || |||||||||||||| || |||| Sbjct 74108 CTTTGCTCAACGTCTTGTCGCATTCGCTGCCGTTGAAGGCATCTTCTTCTCCGGATCCTT 74167 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 |||||| ||||||||||||||| || ||| | ||| |||||||||||||||| |||| Sbjct 74168 CGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCT-TATGGCCGGACTCACCTTCTCCAACG 74226 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 |||||||| | | ||||| || || || | || || || |||||||| ||||| || Sbjct 74227 AACTCATCTCCCGTGACGAAGGTCTCCACACCGATTTCGCATGCCTCCTCTTCTC---CC 74283 Query 42871 ACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGA 42930 | |||| |||| || || ||| | |||| | | | ||||| |||||||| | | Sbjct 74284 ATCTCAAGCACCGCCCATCCAAGCAAGCCGTCCAAGACGTTATCACCGAGGCCGTCGCAA 74343 Query 42931 TCGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGAC 42989 | ||| | || ||| | || || | || || ||| | || | ||||||||| | | Sbjct 74344 TTGAGCAAGAATTCTTGACCGAGGCTCTTCCTTGTG-CTCTTTTGGGCATGAACTCCACC 74402 Query 42990 CTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAG 43048 |||||| |||| |||||| | | ||| || || | |||||| | ||||| | Sbjct 74403 CTCATGAAGCAA-TACATCGAATTCGTTGCTGATCGTCTCCTCATCGCTTTGGGTAACGA 74461 Query 43049 CCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAA 43108 | ||||||| | | ||| || ||||| ||||||||||| || |||| ||||| Sbjct 74462 CAAAGTCTACAAGTCTGCCAACCCATTTGACTTCATGGAGAACATTTCCTTGGCCGGCAA 74521 Query 43109 GACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 ||| ||||| ||||| ||| | || | || ||||| Sbjct 74522 GACTAACTTCTTCGAAAAGAGAGTTGGTGATTACCA 74557 >seq38 Length=269250 Score = 141 bits (156), Expect = 2e-28 Identities = 427/647 (66%), Gaps = 17/647 (3%) Strand=Plus/Minus Query 244760 ATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAG 244819 || || ||||||| || || ||| ||| |||||| || |||||||| ||||||||| Sbjct 56140 ATAGTACCCAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAAG 56081 Query 244820 GGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACC 244879 || ||||||||| || || | || | | || ||| || | |||||||| Sbjct 56080 GGATTTCCGGTCTCGGTTTGAGCCTCAAGAATGGAGTACCAAAGTTTTTGAGCCTTGATA 56021 Query 244880 GTCCTGCGAGCCTTGCCCTCTGCCT---CGTAGCGGGTGTACAGGGCCTCGAACTCGGGG 244936 ||| ||||| ||||||| ||||| |||| | ||| || ||||||||||| | Sbjct 56020 GTCTTGCGACCCTTGCC---TGCCTTTTCGTAACCCTCGTAGAGAGCCTCGAACTCCTCG 55964 Query 244937 CCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAGACTCCACTCGCCGC 244994 || | || || ||| || || || || | |||||||||||| |||| || || Sbjct 55963 CCATAAACATCTGCTAAACCTGGACATTCGTTG--GGGCACATGAGAGTCCAATCCCCAT 55906 Query 244995 CGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGG 245054 | | || | || |||||| || || || ||||| | ||| | |||||| || | | Sbjct 55905 TCTTTTCAACACGCTTCATGAATAGATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTG 55846 Query 245055 TCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGT 245114 | || || |||| || || | || || | || ||||| || || | | Sbjct 55845 CACGAACTTCTTCTTTGCCATGATTTTTGCGTAGATCAAGGAACTCAAAAACATCCGCAT 55786 Query 245115 GCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCA 245174 |||| ||||| | ||| ||||| | ||| || || ||||| || || || || | || || Sbjct 55785 GCCATGGCTCAAGGTAAACAGCAAAGGCACCAGGACGCTTATTACCACCTTGAT-CAACA 55727 Query 245175 TCCTCTCG-AGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTT 245232 | ||| | || | |||||| | || || |||| || || |||||||||| ||||| Sbjct 55726 T-ATCTGGCAGTGTTGTTGAAAACTCGGAGCATAGGAACGATACCGTTAGAGTTTCCGTT 55668 Query 245233 GGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTG-ATGGACATGCCTAGTCCGC 245291 ||| || ||||| ||||| | | | || | | || ||| | || | || | Sbjct 55667 GGTACCGGCAATGTATGCGCCAGTAGCACGGA-TTCGGTGAATGTTGAGACCAATACCAC 55609 Query 245292 CGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGT 245351 |||| | ||| ||||| | || || |||| | || || || || || || |||| Sbjct 55608 CGGCATTCTTTGAGATCATAGCACAAATCTTCAAAGTATCGTAAATACCATCAATACTGT 55549 Query 245352 CCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGG 245398 || |||||||| || || ||||| || || || | | ||||| || Sbjct 55548 CCTCCTTCATGTCGATAAGGAAGCATGATGAAAG-TTGTGCTTGTGG 55503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944334171393760