Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq18 122 2e-22 seq17 116 9e-21 seq3 116 9e-21 seq35 100 7e-16 >seq18 Length=865119 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | | || | |||| ||| || |||||||| || || |||| Sbjct 543473 CCACCACGGAGACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAA 543414 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | ||| ||||| |||||||||| |||||||| ||| Sbjct 543413 AGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGA 543354 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || || |||||||| || | || || || || || | ||| || || || Sbjct 543353 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAACC 543294 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| || || || || || ||||||||||| |||||||| Sbjct 543293 TCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 543247 >seq17 Length=875485 Score = 116 bits (128), Expect = 9e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||| || || || | ||| || ||||||||||| ||||| ||||| ||||||||| Sbjct 658243 TTTTGGATGTTGTAATCTGAGAGAGTACGTCCGTCTTCCAATTGCTTTCCAGCGAAGATC 658184 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | ||| |||||| || ||||| || || |||||||| || | || || || || Sbjct 658183 AAACGTTGTTGATCGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 658124 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | ||| || || || || || ||||| ||||| || || || ||||||||||| Sbjct 658123 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 658065 >seq3 Length=2676204 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || | ||| | || ||| ||||| || || || || | Sbjct 1949779 CCACCACGGAGACGAAGGACCAAATGTAAAGTCGATTCCTTTTGAATGTTGTAATCCGAA 1949838 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | ||| || || || ||||| ||||| |||||| |||| Sbjct 1949839 AGTGTACGACCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCGGGTGGG 1949898 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||| ||||| || | ||||| || || || | ||| ||||| || Sbjct 1949899 ATACCCTCCTTATCTTGGATCTTTGACTTCACATTGTCGATGGTATCCGATGATTCAACC 1949958 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 1949959 TCCAAAGTGATTGTCTTTCCGGTAAGGGTCTTGACGAAGATCTGCAT 1950005 Score = 114 bits (126), Expect = 3e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| || || | |||| || || || ||||||||||| |||| Sbjct 1950007 CCACCACGAAGTCTGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATATTATAATCGGAA 1950066 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| |||||||| | ||| ||||| ||||| |||| ||| ||||| || Sbjct 1950067 AGGGTGCGACCGTCTTCCAGTTGCTTTCCAGCGAAAATCAAACGTTGTTGGTCGGGAGGA 1950126 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || || || || | || ||||| || || | || ||||| || Sbjct 1950127 ATGCCTTCCTTGTCTTGAATCTTAGACTTAACGTTGTCGATGGTGTCTGAAGATTCGACC 1950186 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATAT 288467 || || ||||| ||||| ||||| |||||||| |||| ||| Sbjct 1950187 TCAAGGGTGATGGTCTTTCCGGTAAGAGTCTTAACGACTAT 1950227 >seq35 Length=307329 Score = 100 bits (110), Expect = 7e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 269131 GACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAA 269190 || ||| | || ||| || | | || ||||| || |||||||| ||||| |||||| Sbjct 74364 GAGGCTCTTCCTTGTGCTCTTTTGGGCATGAACTCCACCCTCATGAAGCAATACATCGAA 74423 Query 269191 TTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAAT 269250 ||||| ||||||||| || ||| || | ||| | || ||||| ||||| || || Sbjct 74424 TTCGTTGCTGATCGTCTCCTCATCGCTTTGGGTAACGACAAAGTCTACAAGTCTGCCAAC 74483 Query 269251 CCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGT 269310 || || | ||| ||||| ||||| | | || ||||| ||||||||||||||| | Sbjct 74484 CCATTTGACTTCATGGAGAACATTTCCTTGGCCGGCAAGACTAACTTCTTCGAAAAGAGA 74543 Query 269311 GTCAGCGACTATCAACGTCCTGGTGTAATG 269340 || | || || ||| ||||||| ||| Sbjct 74544 GTTGGTGATTACCAAAAGGCTGGTGTCATG 74573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179647961298828