Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq18 123 3e-23 seq3 123 3e-23 >seq18 Length=865119 Score = 123 bits (136), Expect = 3e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| |||||||| || | ||| ||||||||| || |||||||| | || || || | Sbjct 543462 ACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGGCC 543403 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || || ||||| || ||||| || | |||||| ||||||| ||| | | |||||| Sbjct 543402 ATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCCTT 543343 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| ||| || |||| | | | |||||| || || || |||| ||||| Sbjct 543342 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGAT 543283 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||||||||| || ||||| || ||||| ||||| Sbjct 543282 GGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 543247 >seq3 Length=2676204 Score = 123 bits (136), Expect = 3e-23 Identities = 171/237 (72%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 41973 ATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTG 42032 || ||| |||| || | | ||| | |||||| ||||| ||||| ||||||||||||||| Sbjct 1949542 ATCTATTGACCACCACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTG 1949601 Query 42033 TAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGG 42092 ||||| | || || | |||| || | ||||| || || || || | ||| || || Sbjct 1949602 TAATCCGAAAGGGTTCTGCCGTCCTCCAATTGCTTTCCTGCAAAGATCAATCGTTGTTGA 1949661 Query 42093 TCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCT 42151 || | ||| | || |||||||||| ||| | |||| ||| | | | | || || Sbjct 1949662 TCAGGTGGAATGCCCTCCTTGTCC-TGAATCTTTGATTTTACATTATCAATGGTATCTGA 1949720 Query 42152 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||||| || | || ||||| ||||| || | ||||| |||||||||||||| Sbjct 1949721 CGATTCCACCTCTAATGTAATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1949777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543209907391840