Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq3 91.5 1e-13
seq18 82.4 8e-11
>seq3
Length=2676204
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || | ||| | |||||||| ||||||||||||||||| | | || || | ||
Sbjct 1949793 AAGGACCAAATGTAAAGTCGATTCCTTTTGAATGTTGTAATCCGAAAGTGTACGACCATC 1949852
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||||| ||||| || ||| | || || || || || ||||| || || || || || ||
Sbjct 1949853 CTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCGGGTGGGATACCCTCCTTATC 1949912
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
||| || ||| ||| ||| || | ||||| | || || || | ||| | ||
Sbjct 1949913 TTGGATCTTTGACTTCACATTGTCGATGGTATCCGATGATTCAACCTCCAAAGTGATTGT 1949972
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||| ||||| | || || ||||| || |||||
Sbjct 1949973 CTTTCCGGTAAGGGTCTTGACGAAGATCTGCAT 1950005
Score = 84.2 bits (92), Expect = 2e-11
Identities = 142/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || || | ||| || || | || | || || ||||| || |||||||| ||
Sbjct 1950289 ACCACCACGAAGTCTGAGGACCAAGTGGAGAGTAGACTCTTTCTGGATGTTGTAGTCACT 1950348
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| |||||| | |||||||| || || ||||| |||| | ||||| |||||||||||
Sbjct 1950349 CAAGGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAAACGCTGTTGGTCGGGAGG 1950408
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
|||||| || || || || || || ||| ||| || | || || | || || ||
Sbjct 1950409 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTGGACTCAAC 1950468
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCA 64421
|| | || | ||||| |||||||
Sbjct 1950469 CTCGAGGGTAATAGTCTTACCGGTCA 1950494
>seq18
Length=865119
Score = 82.4 bits (90), Expect = 8e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300
|||| || || || ||||| ||||||||||| | | |||||| | ||||| || |||
Sbjct 543449 TGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGGCCATCTTCGAGTTGC 543390
Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360
|| ||||| | || | ||||| |||||||| |||||||| || || || || || ||
Sbjct 543389 TTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCCTTGTCCTGGATCTTG 543330
Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420
||| ||| || | || || | || || || | || | ||| ||||| ||
Sbjct 543329 GACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTTTTGCCCGTG 543270
Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443
| || || ||||| || |||||
Sbjct 543269 AGGGTCTTGACGAAGATCTGCAT 543247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499642139391440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |