Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3 91.5 1e-13 seq18 82.4 8e-11 >seq3 Length=2676204 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||| | |||||||| ||||||||||||||||| | | || || | || Sbjct 1949793 AAGGACCAAATGTAAAGTCGATTCCTTTTGAATGTTGTAATCCGAAAGTGTACGACCATC 1949852 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||| ||||| || ||| | || || || || || ||||| || || || || || || Sbjct 1949853 CTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCGGGTGGGATACCCTCCTTATC 1949912 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || ||| ||| ||| || | ||||| | || || || | ||| | || Sbjct 1949913 TTGGATCTTTGACTTCACATTGTCGATGGTATCCGATGATTCAACCTCCAAAGTGATTGT 1949972 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| ||||| | || || ||||| || ||||| Sbjct 1949973 CTTTCCGGTAAGGGTCTTGACGAAGATCTGCAT 1950005 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| || || | || | || || ||||| || |||||||| || Sbjct 1950289 ACCACCACGAAGTCTGAGGACCAAGTGGAGAGTAGACTCTTTCTGGATGTTGTAGTCACT 1950348 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | |||||||| || || ||||| |||| | ||||| ||||||||||| Sbjct 1950349 CAAGGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAAACGCTGTTGGTCGGGAGG 1950408 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||| || || || || || || ||| ||| || | || || | || || || Sbjct 1950409 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTGGACTCAAC 1950468 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCA 64421 || | || | ||||| ||||||| Sbjct 1950469 CTCGAGGGTAATAGTCTTACCGGTCA 1950494 >seq18 Length=865119 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || ||||| ||||||||||| | | |||||| | ||||| || ||| Sbjct 543449 TGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGGCCATCTTCGAGTTGC 543390 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| | || | ||||| |||||||| |||||||| || || || || || || Sbjct 543389 TTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCCTTGTCCTGGATCTTG 543330 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| || | || || | || || || | || | ||| ||||| || Sbjct 543329 GACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTTTTGCCCGTG 543270 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | || || ||||| || ||||| Sbjct 543269 AGGGTCTTGACGAAGATCTGCAT 543247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499642139391440