Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq18 96.9 3e-15 seq3 89.7 5e-13 >seq18 Length=865119 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| || || || || | | ||||||||||| |||||||| ||| Sbjct 543473 CCACCACGGAGACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAA 543414 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || |||||||| || |||| |||| | ||||||||||| || || Sbjct 543413 AGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGA 543354 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | |||| || | |||||||| ||||| || Sbjct 543353 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTG-TCGATGGTGTCGGAAGACTCAAC 543295 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 ||||| || | ||||| || || || || || || || ||||||||| || Sbjct 543294 CTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGACT 543243 >seq3 Length=2676204 Score = 89.7 bits (98), Expect = 5e-13 Identities = 125/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || ||||||||||| |||| || || || || |||||||| |||| Sbjct 1950323 GACTCTTTCTGGATGTTGTAGTCACTCAAGGTGCGACCATCTTCAAGTTGTTTTCCGGCG 1950382 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || | |||||||||||| ||||| || || || ||||| ||| || || | | Sbjct 1950383 AAAATCAAACGCTGTTGGTCGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACA 1950442 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCA 138592 ||| || | ||||||| | ||||| ||||||| || | || ||||| |||| Sbjct 1950443 TTG-TCGATGGTGTCGCTGGACTCAACCTCGAGGGTAATAGTCTTACCGGTCA 1950494 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||||| | || ||||||||||||||||| || Sbjct 1949779 CCACCACGGAGACGAAGGACCAAATGTAAAGTCGATTCCTTTTGAATGTTGTAATCCGAA 1949838 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||| ||||| ||||| | | |||| ||||| ||||| || || || Sbjct 1949839 AGTGTACGACCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCGGGTGGG 1949898 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || || || ||| ||| || | |||| || | ||| || | || || || Sbjct 1949899 ATACCCTCCTTATCTTGGATCTTTGACTTCACATTG-TCGATGGTATCCGATGATTCAAC 1949957 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || || || || || || || |||||||| Sbjct 1949958 CTCCAAAGTGATTGTCTTTCCGGTAAGGGTCTTGACGAAGATCTGCAT 1950005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496259757402720