Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq18 107 1e-18
seq3 104 2e-17
seq17 84.2 2e-11
>seq18
Length=865119
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || | | ||| || || ||||| || || || ||||| ||||||||||||
Sbjct 543473 CCACCACGGAGACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAA 543414
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | | | ||||| | ||| || || ||| | ||||| |||||||||||| ||||
Sbjct 543413 AGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGA 543354
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
||||| |||||||| || ||| || ||| | || || || ||| | || ||
Sbjct 543353 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAACC 543294
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | ||| |||||||| || || || || || || || || |||||
Sbjct 543293 TCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 543247
>seq3
Length=2676204
Score = 104 bits (114), Expect = 2e-17
Identities = 146/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || | ||| | || || || || ||||| ||||| || |||||||| || ||
Sbjct 1950290 CCACCACGAAGTCTGAGGACCAAGTGGAGAGTAGACTCTTTCTGGATGTTGTAGTCACTC 1950349
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
| | | | ||||| | |||||| || ||| | |||||||||||||||||| |||
Sbjct 1950350 AAGGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAAACGCTGTTGGTCGGGAGGA 1950409
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
||||| |||||||| || ||| || ||| | || || || ||||| || ||
Sbjct 1950410 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTGGACTCAACC 1950469
Query 15130 TCTAAGGTAATGGTTTTACCTGTCA 15154
|| | |||||| || ||||| ||||
Sbjct 1950470 TCGAGGGTAATAGTCTTACCGGTCA 1950494
Score = 95.1 bits (104), Expect = 9e-15
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || | ||| | || || ||||||||||| || || || || || ||||||
Sbjct 1950007 CCACCACGAAGTCTGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATATTATAATCGGAA 1950066
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | | ||||||| | ||| || |||||| | |||||||| ||||||||| |||
Sbjct 1950067 AGGGTGCGACCGTCTTCCAGTTGCTTTCCAGCGAAAATCAAACGTTGTTGGTCGGGAGGA 1950126
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| ||||||||||| ||| || || || | || || || || | ||| ||
Sbjct 1950127 ATGCCTTCCTTGTCTTGAATCTTAGACTTAACGTTGTCGATGGTGTCTGAAGATTCGACC 1950186
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTAC 15164
|| | ||| ||||| || || || ||||| || ||
Sbjct 1950187 TCAAGGGTGATGGTCTTTCCGGTAAGAGTCTTAAC 1950221
>seq17
Length=875485
Score = 84.2 bits (92), Expect = 2e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 14989 TTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATC 15048
||||| ||||||||||| |||| | | ||||||| ||||| || |||||| | |||
Sbjct 658243 TTTTGGATGTTGTAATCTGAGAGAGTACGTCCGTCTTCCAATTGCTTTCCAGCGAAGATC 658184
Query 15049 AAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCT 15108
||||| ||||| ||| |||||||| |||||||| || ||| || ||| | ||
Sbjct 658183 AAACGTTGTTGATCGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 658124
Query 15109 ATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAA 15167
|| || ||| || || || | ||| ||||| || || || || || || || ||
Sbjct 658123 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 658065
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357390144465410
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |