Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq18 141 9e-29 seq3 118 1e-21 seq17 86.0 6e-12 >seq18 Length=865119 Score = 141 bits (156), Expect = 9e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || |||||||| || | || ||||| ||||| || ||||||||| Sbjct 543473 CCACCACGGAGACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAA 543414 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || || || ||||| ||| ||||||||||||| || ||||| || Sbjct 543413 AGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGA 543354 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||||| | |||| |||||| | | ||| || Sbjct 543353 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAACC 543294 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 |||| ||| | |||||||| || || || || || || ||||||||| || Sbjct 543293 TCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGACT 543243 >seq3 Length=2676204 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | ||||||||||| || || ||||| || | | Sbjct 1950290 CCACCACGAAGTCTGAGGACCAAGTGGAGAGTAGACTCTTTCTGGATGTTGTAGTCACTC 1950349 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || || |||||||| ||| | ||||| ||||| || |||||||| Sbjct 1950350 AAGGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAAACGCTGTTGGTCGGGAGGA 1950409 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||||| | |||| |||||| | ||| || Sbjct 1950410 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTGGACTCAACC 1950469 Query 127067 TCGACGGTCACCGTTTTGCCGGTCA 127091 |||| ||| | || || ||||||| Sbjct 1950470 TCGAGGGTAATAGTCTTACCGGTCA 1950494 >seq17 Length=875485 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 126968 TGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATT 127027 || ||||||||| ||||||| || || ||||||||||| || |||||||||||| ||| Sbjct 658201 TGCTTTCCAGCGAAGATCAAACGTTGTTGATCGGGAGGAATTCCCTCCTTGTCCTGGATC 658142 Query 127028 TTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCG 127087 || ||||| | |||| |||||| | |||||| || | ||| | || ||||| Sbjct 658141 TTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCC 658082 Query 127088 GTCAGAGTTTTTACAAA 127104 || || || || || || Sbjct 658081 GTAAGGGTCTTGACGAA 658065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498267958240