Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq3 109 5e-19
seq18 107 2e-18
>seq3
Length=2676204
Score = 109 bits (120), Expect = 5e-19
Identities = 141/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || || || ||||| ||||||||||||||| | ||| | || |||| |||
Sbjct 1950031 TGAAGGGTAGACTCCTTCTGGATATTATAATCGGAAAGGGTGCGACCGTCTTCCAGTTGC 1950090
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
||||| ||| | ||||| ||||| ||||| || ||||||||||| || ||||||| | ||
Sbjct 1950091 TTTCCAGCGAAAATCAAACGTTGTTGGTCGGGAGGAATGCCTTCCTTGTCTTGAA-TCTT 1950149
Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
| | | || | || | |||||| ||||| ||||| || || || | || || |||||
Sbjct 1950150 AGACTTAACGTTGTCGATGGTGTCTGAAGATTCGACCTCAAGGGTGATGGTCTTTCCGGT 1950209
Query 45317 TAGAGTTTTTAC 45328
||||| || ||
Sbjct 1950210 AAGAGTCTTAAC 1950221
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 45149 TTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTA 45208
||||||||| ||||| ||||| | |||| | || |||||||| |||||||| |
Sbjct 1949586 TTCCTTTTGAATATTGTAATCCGAAAGGGTTCTGCCGTCCTCCAATTGCTTTCCTGCAAA 1949645
Query 45209 TATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGC 45268
||||||||||| || || || |||||||| || || || ||||| ||| ||| |
Sbjct 1949646 GATCAATCGTTGTTGATCAGGTGGAATGCCCTCCTTGTCCTGAATCTTTGATTTTACATT 1949705
Query 45269 TTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328
|| | ||| || || || || || || | |||| || ||||| || | ||| || ||
Sbjct 1949706 ATCAATGGTATCTGACGATTCCACCTCTAATGTAATGGTCTTGCCAGTCAAAGTCTTGAC 1949765
Query 45329 AAAAATTTGCAT 45340
||| ||||||||
Sbjct 1949766 AAAGATTTGCAT 1949777
>seq18
Length=865119
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || ||||| | ||||| | || || || || ||||||||||| || ||||||
Sbjct 543473 CCACCACGGAGACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAA 543414
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| ||| ||| || | ||| ||||| ||| | |||||||| || ||||| || |||
Sbjct 543413 AGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGA 543354
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|| || || || || || || || |||| || | ||||||||||||||| ||
Sbjct 543353 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAACC 543294
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || | |||||||| || || || || || || || |||||
Sbjct 543293 TCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 543247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452000793082960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |