Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq18 138 1e-27 seq35 134 1e-26 seq17 102 8e-17 seq3 96.9 3e-15 >seq18 Length=865119 Score = 138 bits (152), Expect = 1e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||||||||||||| |||| || ||| | || Sbjct 543247 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCC 543306 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||||||||| |||||||| Sbjct 543307 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCCGACCAA 543366 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| || || || || || || | |||||||| ||| |||||| Sbjct 543367 CAGCGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTTTCCGATTACAAC 543426 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| | || || || |||||| | ||| Sbjct 543427 ATCCAAAAGGAGTCCACTCTTCACTTGGTGTTACGT 543462 >seq35 Length=307329 Score = 134 bits (148), Expect = 1e-26 Identities = 195/275 (71%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227 || ||||||||||| || || |||| ||||| | ||||||||| |||||| || Sbjct 73945 TATGTGTCGATGAGAAGAGAGTATGTTTCGGAGTGAATGTTCTCCATCATGATTTGGAAA 73886 Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287 ||||| ||||| || ||||| | ||| ||||| | ||| ||||| |||| || Sbjct 73885 CCGTAGAAGCATCGTGCCTCTGGGATCTGAACTTCACCACTGAATCGCTCAACCAAGTTC 73826 Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347 |||||||| || ||||| |||||||| || || || ||||| |||||| | ||| Sbjct 73825 TCGTTGACAATTCCGTCTGATGCGGCGAAGAATGCGAGAACGTGGGAGATGAAGTAACGC 73766 Query 133348 TCGTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404 |||| || || | | | ||||||| | ||||| |||| || | ||| || Sbjct 73765 TCGTCATCATTGAGTCTGTTGTTCCAGTCGTGGAGATCCTTTGACAAATCAATCTCTTCT 73706 Query 133405 ACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||||| || || ||||| |||||||||||||| Sbjct 73705 GCGGTCCAGAAAGATGCCTCTGCTTTTTTGTACAT 73671 Score = 125 bits (138), Expect = 7e-24 Identities = 353/531 (66%), Gaps = 12/531 (2%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| ||||| || || || || | || || || || ||||| || || | Sbjct 74573 CATGACACCAGCCTTTTGGTAATCACCAACTCTCTTTTCGAAGAAGTTAGTCTTGCCGGC 74514 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 |||||||||| | ||| || || || |||||||| | |||||| ||| || || | Sbjct 74513 CAAGGAAATGTTCTCCATGAAGTCAAATGGGTTGGCAGACTTGTAGA-CTTTGT--CGTT 74457 Query 132711 ---CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCA 132767 || ||| ||| || | || || ||||| |||||||||||| |||| | | Sbjct 74456 ACCCAAAGCGATGAGGAGACGATCAGCAACGAATTCGATGTATTGCTTCATGAGGGTGGA 74397 Query 132768 ATTAAGTCCCAGCAGACGCACC-GGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826 || | |||| ||| |||| || || || ||||| | || |||||| || |||| Sbjct 74396 GTTCATGCCCAAAAGA-GCACAAGGAAGAGCCTCGGTCAAGAATTCTTGCTCAATTGCGA 74338 Query 132827 CCGCGTCGGTGACGATTTCCCTAACG-CGCGCCGCGCTCGGCCGTTGCACCAAATGCTTG 132885 | || ||||||| | || ||| | || | | ||| || || | ||| | Sbjct 74337 CGGCCTCGGTGATAACGTCTTGGACGGCTTGCTTGGATGGGCGGT-GCTTGAGATGGGAG 74279 Query 132886 AACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTG 132945 || | | ||| || || ||| || | || ||||| | ||| |||||||||||| | Sbjct 74278 AAGAGGAGGCATGCGAAATCGGTGTGGAGACCTTCGTCACGGGAGATGAGTTCGTTGGAG 74219 Query 132946 AAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC 133005 || || | |||| ||| || || || || |||||||| || || | |||||| || Sbjct 74218 AAGGTGAGTCCGGCCATAAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGATCCG 74159 Query 133006 GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG-CTTC 133064 || ||||||| ||| || ||||| ||||| || || || || | | || |||| ||| Sbjct 74158 GAGAAGAAGATGCCTTCAACGGCAGCGAATGCGACAAGACGTTGAGCAAAGGTGGAGTTC 74099 Query 133065 TTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGG 133115 || || | ||||| | ||||| |||||||| | |||| ||| || Sbjct 74098 TTATCTTG-AATCCATTTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGG 74049 >seq17 Length=875485 Score = 102 bits (112), Expect = 8e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| | || |||||| || |||||| | | Sbjct 658065 TTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATC 658124 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||||||||| |||| ||||| || | Sbjct 658125 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCCGATCAACAACGTTTG 658184 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| || || || |||| |||| || || ||| || ||||||||||||||| Sbjct 658185 ATCTTCGCTGGAAAGCAATTGGAAGACGGACGTACTCTCTCAGATTACAACATCCAAAAG 658244 Query 38433 G 38433 | Sbjct 658245 G 658245 >seq3 Length=2676204 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327 || || || || || ||| |||| || ||| ||| ||||| | | | | | || Sbjct 1950492 ACCGGTAAGACTATTACCCTCGAGGTTGAGTCCAGCGACACCATCGACAATGTCAAGTCC 1950433 Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||||||||| ||||||||||||| | |||| ||| || ||| Sbjct 1950432 AAGATCCAGGACAAGGAGGGAATTCCTCCCGACCAACAGCGTTTGATTTTCGCCGGAAAA 1950373 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 || || || || | |||||| | | |||||||||||||| || || | || || || Sbjct 1950372 CAACTTGAAGATGGTCGCACCTTGAGTGACTACAACATCCAGAAAGAGTCTACTCTCCAC 1950313 Query 38448 TTGGTGCT 38455 ||||| || Sbjct 1950312 TTGGTCCT 1950305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170136579840